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ClCG06G009760 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G009760
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retroelement transposase
Genome locationCG_Chr06:19183229..19183720
RNA-Seq ExpressionClCG06G009760
SyntenyClCG06G009760
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031882.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]8.5e-0560.87Show/hide
Query:  KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
        +FE L AP+ HLSDEVLESTFLN L   I  E+L +EP+GL Q M+
Subjt:  KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
KAA0053502.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]1.9e-0450Show/hide
Query:  CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
        C +F++LVAP+P L  EVLE TF+N L   +  ++ C EP+GL Q MK
Subjt:  CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
TrEMBL top hitse value%identityAlignment
A0A5A7SLB5 Gypsy/ty3 element polyprotein4.1e-0560.87Show/hide
Query:  KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
        +FE L AP+ HLSDEVLESTFLN L   I  E+L +EP+GL Q M+
Subjt:  KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
A0A5A7UCK4 Ty3-gypsy retroelement transposase9.2e-0550Show/hide
Query:  CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
        C +F++LVAP+P L  EVLE TF+N L   +  ++ C EP+GL Q MK
Subjt:  CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTATTCTTAGTTGTGGATCTAGACTTGGTGCCCTCCAGCGATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTCGCAAATTTGAAAGATTAGT
AGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTTCTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATC
AACCGATGAAGACAACC
mRNA sequenceShow/hide mRNA sequence
GCTCGACGAGCGGGGTGGTGCGACCCTGTTGAGAAGCGAGCGACCTAAATTCAAGAAAGTGGAAATGCTTGTATTCTTAGTTGTGGATCTAGACTTGGTGCCCTCCAGCG
ATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTCGCAAATTTGAAAGATTAGTAGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTT
CTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATCAACCGATGAAGACAACC
Protein sequenceShow/hide protein sequence
MLVFLVVDLDLVPSSDDCWRVSSHPMKAICRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMKTT