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ClCG06G010110 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G010110
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr06:21024157..21044942
RNA-Seq ExpressionClCG06G010110
SyntenyClCG06G010110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]3.2e-1040.17Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERL V+ KK+ + P     + L     +K S +N   N+            K K P+S+  +WR ++H D EN+  ++ P ETK  GEI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]7.1e-1039.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERL V+ KK+ + P     + L     +K S +N   N+            K K P+S+  +WR ++H D +N+  ++ P ETK  GEI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]7.1e-1039.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERL V+ KK+ + P     + L     +K S +N   N+            K K P+S+  +WR ++H D +N+  ++ P ETK  GEI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.1e-1039.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERL V+ KK+ + P     + L     +K S +N   N+            K K P+S+  +WR ++H D +N+  ++ P ETK  GEI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.1e-1039.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERL V+ KK+ + P     + L     +K S +N   N+            K K P+S+  +WR ++H D +N+  ++ P ETK  GEI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H4.9e-0938.79Show/hide
Query:  MDEKVAFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVV
        +D + AFERLS+T KK+ + P    ++RL    +  H   ++S + K +E +            S+ S+WR +RH + E+   +E P E KGE EIRS V
Subjt:  MDEKVAFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVV

Query:  PLGMKRKIFVTLDSSK
        P  MKRK FVTL++S+
Subjt:  PLGMKRKIFVTLDSSK

A0A5A7SPY4 RNase H domain-containing protein6.5e-0939.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERLS+T KK+ + P    ++RL    +  H   ++S + K +E +            S  S+W  ++H D E+   +E P E KGE EI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

A0A5A7T485 Reverse transcriptase5.8e-1040.17Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AF+RLS+T KK+ + P  S ++ L    +  H   ++S + K +E +            S+ S+W  ++H D E+H  +E P E KGE EIRS VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

A0A5D3BV77 Reverse transcriptase5.8e-1040.17Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AF+RLS+T KK+ + P  S ++ L    +  H   ++S + K +E +            S+ S+W  ++H D E+H  +E P E KGE EIRS VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

A0A5D3DB95 RNase H domain-containing protein6.5e-0939.32Show/hide
Query:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK
        AFERLS+T KK+ + P    ++RL    +  H   ++S + K +E +            S  S+W  ++H D E+   +E P E KGE EI S VP  MK
Subjt:  AFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMK

Query:  RKIFVTLDSSKSSLKTK
        RK FVTL++S+ SLK K
Subjt:  RKIFVTLDSSKSSLKTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAAAGTGGCCTTTGAAAGATTAAGTGTGACCACGAAGAAGAGTGACAGAATACCTTGCGGGTCAACCGTTGATCGCCTTAAGTGTGTAAGTGTTGAGAAGCA
CTCTAGTGAAAATGCATCTTGCAACATGAAAGCTGAAGAGGAAAGTGTCGCTAGTGCAACCGTAAAAAGCAAGGGGCCGATATCCCAAGCATCAATTTGGCGCCCCGTTA
GGCACGAGGATGCCGAAAACCATTTAAAGGAGGAGCTGCCTCATGAGACAAAAGGTGAGGGAGAAATTCGTAGTGTTGTCCCTTTAGGAATGAAGAGAAAGATTTTCGTT
ACCCTCGATTCAAGCAAAAGCTCATTAAAGACGAAAGCTCAGAATAGGCAGAAGGTGAAACTTCATGTCACCAAATCACCATCATCGAAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAAAAGTGGCCTTTGAAAGATTAAGTGTGACCACGAAGAAGAGTGACAGAATACCTTGCGGGTCAACCGTTGATCGCCTTAAGTGTGTAAGTGTTGAGAAGCA
CTCTAGTGAAAATGCATCTTGCAACATGAAAGCTGAAGAGGAAAGTGTCGCTAGTGCAACCGTAAAAAGCAAGGGGCCGATATCCCAAGCATCAATTTGGCGCCCCGTTA
GGCACGAGGATGCCGAAAACCATTTAAAGGAGGAGCTGCCTCATGAGACAAAAGGTGAGGGAGAAATTCGTAGTGTTGTCCCTTTAGGAATGAAGAGAAAGATTTTCGTT
ACCCTCGATTCAAGCAAAAGCTCATTAAAGACGAAAGCTCAGAATAGGCAGAAGGTGAAACTTCATGTCACCAAATCACCATCATCGAAGAATTAG
Protein sequenceShow/hide protein sequence
MDEKVAFERLSVTTKKSDRIPCGSTVDRLKCVSVEKHSSENASCNMKAEEESVASATVKSKGPISQASIWRPVRHEDAENHLKEELPHETKGEGEIRSVVPLGMKRKIFV
TLDSSKSSLKTKAQNRQKVKLHVTKSPSSKN