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ClCG06G010565 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G010565
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCG_Chr06:22718194..22718910
RNA-Seq ExpressionClCG06G010565
SyntenyClCG06G010565
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156327.1 uncharacterized protein LOC111023248 [Momordica charantia]1.7e-4265.87Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        L+QL+ PD+ QQPLCI +P     FE+K+ LIHLLP F   AGEDPHKHLK+FH+VC  M+PHGV E+Q+NLRAF FSLK+  KD LYY P G ITTWN+
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGIT
        MK+LFLDK+F A +A NI+KEIYGIT
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGIT

XP_024036911.1 uncharacterized protein LOC112096919 [Citrus clementina]2.7e-4065.6Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        LR+L+EPD+ QQPLCI Y    + FE+K+ LIHLLP+F G AGEDPHKHLK+FHVVC  MRP GVTEEQ+ LRAF FS+    KD LYY PPG ITTWN 
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        +KK FL+KYF A +A NI+K+I GI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

XP_024041424.1 uncharacterized protein LOC112098931 [Citrus clementina]2.7e-4065.6Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        LR+L+EPD+ QQPLCI Y    + FE+K+ LIHLLP+F G AGEDPHKHLK+FHVVC  MRP GVTEEQ+ LRAF FS+    KD LYY PPG ITTWN 
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        +KK FL+KYF A +A NI+K+I GI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

XP_024956556.1 uncharacterized protein LOC102619730 [Citrus sinensis]4.5e-4064.8Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        LR+L+EPD+ QQPLCI Y    + FE+K+  IHLLP+F G AGEDPHKHLK+FHVVC  MRP GVTEE + LR F FSL    KD LYY PPGLITTWN 
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        + K FL+KYF A +A NI+K+IYGI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

XP_031272254.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116130670 [Pistacia vera]1.0e-3961.6Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        L++L+ PD  QQPLCI YP   + FE+K+ LIHLLP F GRAGEDP+KHLK+FHVVC  M+P GVTE+ + LRAF FSL +D KD LYY P G +TTWN 
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        MK++FL++YF A +A  I+KEI GI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

TrEMBL top hitse value%identityAlignment
A0A2G9G7U9 DNA-directed DNA polymerase1.9e-3960.8Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        LR+L+ PD+TQQPLCI YP   +PFE+K+ LIHLLP F G   EDPHKHLK+ HVVC  M+P GVT+EQ+ LRAF FSL +  KD L+Y PPG +T W  
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        M +LFLDK+F A +A NI+KEI G+
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

A0A5A7SRF5 Retrotransposon gag protein8.3e-4064Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        +R+L E D  Q+PLCIV   T  PFE+K  LIHLLP F G +GEDPHKHLKDFH+VC+ MRPHG++EEQLNLRAF FSL +  K  LYY  PG ITTW  
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        +KK FL+K+F A + NNI+KEIYGI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

A0A5A7TXC8 Retrotransposon gag protein2.4e-3963.2Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        LR+L++PD  Q+PLCIV P TI PFE+K  LI LLP F G +GED HKHLK FH+VC+ +RPHG++EEQLNLRAF FSL +     LYY  PG ITTW  
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGI
        +KK FL+K+F A +ANNI+KEIYGI
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGI

A0A5A7USL5 Retrotrans_gag domain-containing protein1.4e-3962.7Show/hide
Query:  MLRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWN
        +LR+L+EP+   +PLCIV P T  PFE+K  LIHLLP F G +GEDPHKHLKDFH+VC+ MRP+ ++EEQLNLRAF F L +  K  LYY  PG ITTW 
Subjt:  MLRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWN

Query:  RMKKLFLDKYFSAPKANNIKKEIYGI
         +KK FL+K+F A +ANNI+KEIYGI
Subjt:  RMKKLFLDKYFSAPKANNIKKEIYGI

A0A6J1DRS5 uncharacterized protein LOC1110232488.0e-4365.87Show/hide
Query:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR
        L+QL+ PD+ QQPLCI +P     FE+K+ LIHLLP F   AGEDPHKHLK+FH+VC  M+PHGV E+Q+NLRAF FSLK+  KD LYY P G ITTWN+
Subjt:  LRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNR

Query:  MKKLFLDKYFSAPKANNIKKEIYGIT
        MK+LFLDK+F A +A NI+KEIYGIT
Subjt:  MKKLFLDKYFSAPKANNIKKEIYGIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGGCAGCTATCTGAGCCTGACATGACCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCATCATACCATTTGAGGTTAAGACAAGCCTGATTCATCTGTTGCC
TCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGATATGAGGCCCCATGGGGTCACAGAGGAACAACTAAATCTGA
GAGCATTTTCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTACTACCAGCCCCCTGGTTTGATCACTACATGGAACAGGATGAAGAAGTTGTTTCTTGATAAATAT
TTTTCAGCTCCAAAGGCTAACAACATCAAAAAGGAGATTTATGGCATAACCTAG
mRNA sequenceShow/hide mRNA sequence
CTTGAATTCGTTTTAGTGTGCGTGTGTTTCTTGTCGTGTATGACCCATTCTTCTGGAAGTCTTGGATTCCAAATTTTTGCAGATATAAACAGGGAAGAACGACGACTTTG
ACGAGAAAGGAGGAAACAAAGAGAGTGAGCAAGAAATCGACCAAATTCATCAAAGAGACCAATAAAAAAGATGAGGAATAGTTCGAGGACTTACAACCGGAAGTAGACAT
AAGGGAGACCCCTGAGTGCATGTTAAGGCAGCTATCTGAGCCTGACATGACCCAGCAGCCTCTGTGCATAGTCTACCCTGCCACCATCATACCATTTGAGGTTAAGACAA
GCCTGATTCATCTGTTGCCTCAGTTTATTGGCAGGGCAGGGGAAGACCCTCACAAACACTTAAAGGACTTTCATGTTGTTTGTGAAGATATGAGGCCCCATGGGGTCACA
GAGGAACAACTAAATCTGAGAGCATTTTCCTTTTCTCTGAAGGAGGATGTAAAAGATCAGCTCTACTACCAGCCCCCTGGTTTGATCACTACATGGAACAGGATGAAGAA
GTTGTTTCTTGATAAATATTTTTCAGCTCCAAAGGCTAACAACATCAAAAAGGAGATTTATGGCATAACCTAGAGGGTTAGGGAGACATTGTTCGATTATTGGGAAAGAT
AGAAGTAGCTCTGAGAACTTGTAAAAATACAATTTATTATAGTATGTAGAGAATTTA
Protein sequenceShow/hide protein sequence
MLRQLSEPDMTQQPLCIVYPATIIPFEVKTSLIHLLPQFIGRAGEDPHKHLKDFHVVCEDMRPHGVTEEQLNLRAFSFSLKEDVKDQLYYQPPGLITTWNRMKKLFLDKY
FSAPKANNIKKEIYGIT