CuGenDBv2

Gene ID	ClCG06G012280
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Cytochrome c oxidase, subunit VIb
Genome location	CG_Chr06:25409563..25410371
RNA-Seq Expression	ClCG06G012280
Synteny	ClCG06G012280
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domains	IPR003213 - Cytochrome c oxidase, subunit VIb IPR036549 - Cytochrome c oxidase, subunit VIb superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443871.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo]

9.3e-53

90.35

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

XP_011655945.1 uncharacterized protein LOC101212489 isoform X1 [Cucumis sativus]

2.3e-51

87.72

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA +AD+ G  DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECKALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

XP_022134674.1 uncharacterized protein LOC111006886 [Momordica charantia]

1.9e-53

94.64

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+ADA G LDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PL LPQPYTFKP
Subjt:  PLILPQPYTFKP

XP_022973432.1 cytochrome c oxidase assembly factor 6 [Cucurbita maxima]

2.5e-50

87.5

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++ D  G  +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECKA RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PL+LPQPYTFKP
Subjt:  PLILPQPYTFKP

XP_038878579.1 uncharacterized protein LOC120070767 [Benincasa hispida]

3.4e-55

95.61

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+ADA G LDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTX1 Uncharacterized protein

1.1e-51

87.72

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA +AD+ G  DEVH+DVL+ESRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECKALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

A0A1S3B9T5 uncharacterized protein LOC103487365 isoform X1

4.5e-53

90.35

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

A0A5A7SVN2 Cytochrome c oxidase assembly factor 6 isoform X3

4.5e-53

90.35

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+AD+ G  DEVH+DVL+ESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPN
        PLILPQPYTFKP N
Subjt:  PLILPQPYTFKPPN

A0A6J1BZF0 uncharacterized protein LOC111006886

9.1e-54

94.64

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+ADA G LDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PL LPQPYTFKP
Subjt:  PLILPQPYTFKP

A0A6J1I7I2 cytochrome c oxidase assembly factor 6

1.2e-50

87.5

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++ D  G  +EVH+DVLAE RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECKA RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PL+LPQPYTFKP
Subjt:  PLILPQPYTFKP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein

2.3e-41

66.96

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+   A  + ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC   R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        P+ LPQPYTFKP
Subjt:  PLILPQPYTFKP

AT5G58005.2 Cytochrome c oxidase, subunit Vib family protein

2.3e-41

66.96

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Query:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+   A  + ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC   R  FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        P+ LPQPYTFKP
Subjt:  PLILPQPYTFKP

Sequences

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CDS sequence

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ATGGCTGTCAAAGCTGACGCGCCTGGAAGCTTAGATGAAGTTCATAGCGACGTTCTAGCGGAATCAAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCT
TGTGTGGAGAAGGAATCGGACAAAAAGCCGACTGAAATTGCTTCTGTTGGTCTTATTTACCCTGCCGAGTGTAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGC
AGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTCGATGACAAAGATTCGAGGAGAGGTCCCTTGATACTCCCG
CAGCCATACACTTTTAAGCCCCCTAATTAA

mRNA sequence

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AAGCAACCATAGCAGCTCCGTCTCTGCAGGAACTATGGCTGTCAAAGCTGACGCGCCTGGAAGCTTAGATGAAGTTCATAGCGACGTTCTAGCGGAATCAAGACA
AGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCGACTGAAATTGCTTCTGTTGGTCTTATTTACCCTGCCGAGTG
TAAAGCTTTGAGAGCCAATTTTGTCAAACTTTGCAGAGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCCTCGATGA
CAAAGATTCGAGGAGAGGTCCCTTGATACTCCCGCAGCCATACACTTTTAAGCCCCCTAATTAAGCCAAACACCATCCCCTGGAACAACTTTGGGCGGTCAGAGT
CTCATTACTATCATTTTTTTTTTCTTTTTTATTTTGTTGTTTTTACTTCTTCTTCTTCTTTTACTCTGTATAGAGATGACTGTGGCAATAGATTTAGTAATAATG
TCAATCTTATTACCAACTTACAAAAGCCTATTCCCTCCCTTTTCATACATATAATTTTGGTTATATAGCGTCAAGATGTTTTTCTTGCTTGCT

Protein sequence

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MAVKADAPGSLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRANFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILP
QPYTFKPPN

ClCG06G012280 (gene) of Watermelon (Charleston Gray) v2.5 genome