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ClCG06G012660 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G012660
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCG_Chr06:25817372..25818014
RNA-Seq ExpressionClCG06G012660
SyntenyClCG06G012660
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]1.5e-5188.98Show/hide
Query:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL
        MAMVDSSFIFI  S VP+PL NNNNGRKF ITSAKRTQDSDSD S SSTQ NQ KFPSLRVSNPLLARSVVS+LGLGFVDAGYSGDWSRIGAITKE+EDL
Subjt:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
        LKIGA LVVPFCVFLVFSFSK DSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]1.3e-5086.92Show/hide
Query:  MAMVDSSFIFIRVSAVPYPLSN---NNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKES
        MAMVDSSFIFI +SAVP+PL N   NNNGRKF ITSAKRTQDSD   STSSTQ NQ KFPSLRVSNPLLARSVVS+LGLGFVDAGYSGDWSRIGAITKE+
Subjt:  MAMVDSSFIFIRVSAVPYPLSN---NNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKES

Query:  EDLLKIGAFLVVPFCVFLVFSFSKLDSDSS
        E+LLKIGAFLVVPFCVFLVFSFSK DSDSS
Subjt:  EDLLKIGAFLVVPFCVFLVFSFSKLDSDSS
XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]7.7e-4075Show/hide
Query:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED
        M + DSSFIF  +SA+P+P L +NNN RKF  TSAKRT DSDS  ST      QLKFPSLRV+NPLLARSVV++LGLGFVDAGYSGDWSRIGAITKE+ED
Subjt:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
        LLKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]2.7e-4076.56Show/hide
Query:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED
        M + DS+FIF  +SA+P+P L +NNN RKF  TSAKRT DSDSD S SST   QLKFPSLRV+NPLLARSVV++LGLGFVDAGYSGDWSRIGAITKE+ED
Subjt:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
        LLKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]3.1e-4984.25Show/hide
Query:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL
        MAMV+SSFIFI VS VPYPLSNNN+ RKFRITSAK T+DSDSD     ++++QLKFPSLRVSNPLLARSVVS+LGLGFVDAGYSGDWSRIG ITKESE+L
Subjt:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
        LKIGAFLVVPFCVFLVFSFS+LDSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein7.3e-5288.98Show/hide
Query:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL
        MAMVDSSFIFI  S VP+PL NNNNGRKF ITSAKRTQDSDSD S SSTQ NQ KFPSLRVSNPLLARSVVS+LGLGFVDAGYSGDWSRIGAITKE+EDL
Subjt:  MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
        LKIGA LVVPFCVFLVFSFSK DSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKLDSDSS
A0A1S3B903 uncharacterized protein LOC1034873296.1e-5186.92Show/hide
Query:  MAMVDSSFIFIRVSAVPYPLSN---NNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKES
        MAMVDSSFIFI +SAVP+PL N   NNNGRKF ITSAKRTQDSD   STSSTQ NQ KFPSLRVSNPLLARSVVS+LGLGFVDAGYSGDWSRIGAITKE+
Subjt:  MAMVDSSFIFIRVSAVPYPLSN---NNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKES

Query:  EDLLKIGAFLVVPFCVFLVFSFSKLDSDSS
        E+LLKIGAFLVVPFCVFLVFSFSK DSDSS
Subjt:  EDLLKIGAFLVVPFCVFLVFSFSKLDSDSS
A0A6J1C0R6 uncharacterized protein LOC1110073019.5e-3671.2Show/hide
Query:  MVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDLLK
        M DS+FIF   SAV   L N NN R FR   AKRT DS    +T S Q NQ +FPSLRV NPL+AR VVS+LGLGFVDAGYSGDWSRIGAITKESEDLLK
Subjt:  MVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDLLK

Query:  IGAFLVVPFCVFLVFSFSKLDSDSS
        IGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  IGAFLVVPFCVFLVFSFSKLDSDSS
A0A6J1EZT4 uncharacterized protein LOC1114408613.7e-4075Show/hide
Query:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED
        M + DSSFIF  +SA+P+P L +NNN RKF  TSAKRT DSDS  ST      QLKFPSLRV+NPLLARSVV++LGLGFVDAGYSGDWSRIGAITKE+ED
Subjt:  MAMVDSSFIFIRVSAVPYP-LSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
        LLKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
A0A6J1KT82 uncharacterized protein LOC1114980164.9e-4075Show/hide
Query:  MAMVDSSFIFIRVSAVPYPL-SNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED
        M + DSSFIF  +SA+P+PL  +NNN RKF  TSAKRT DSDS  ST      QLKFPSLRVSNPLLARSVV++LGLGFVDAGYSGDWSRIGAITKE+ED
Subjt:  MAMVDSSFIFIRVSAVPYPL-SNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
         LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LLKIGAFLVVPFCVFLVFSFSKLDSDSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein2.1e-1947.12Show/hide
Query:  NNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLVFSFSK
        N+N  R F   +         D+S  S +   +    ++V N ++ARS +++L LGF+DAGYSGDWSRIG I+KE+E+LLKI AFLVVP C+FL  SFS 
Subjt:  NNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLVFSFSK

Query:  LDSD
          +D
Subjt:  LDSD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGTAGATTCAAGTTTTATCTTCATCCGTGTCTCCGCCGTACCTTATCCCCTCTCGAACAACAATAATGGCAGAAAATTCAGAATCACGTCGGCAAAACGTAC
ACAAGATTCCGATTCAGATTATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCATCACTCAGAGTTTCAAATCCACTTCTCGCCCGATCTGTAGTCTCTATTC
TCGGATTAGGGTTCGTCGACGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAGAGCGAAGATTTGCTTAAGATTGGAGCTTTTTTGGTGGTTCCG
TTTTGCGTATTTCTGGTTTTTTCTTTCTCGAAATTAGATTCGGATTCTTCGTGA
mRNA sequenceShow/hide mRNA sequence
CCCACTTGTTCTCTGTCATTCATGAAAAGGGATGAGGCCGTAATTGAATTCCGCGAGCATTCATTTCAGATTTTCCATAATTGTCCAACCAGAGATAGACAATGGCGATG
GTAGATTCAAGTTTTATCTTCATCCGTGTCTCCGCCGTACCTTATCCCCTCTCGAACAACAATAATGGCAGAAAATTCAGAATCACGTCGGCAAAACGTACACAAGATTC
CGATTCAGATTATTCCACTTCATCAACACAAGCAAATCAACTCAAATTTCCATCACTCAGAGTTTCAAATCCACTTCTCGCCCGATCTGTAGTCTCTATTCTCGGATTAG
GGTTCGTCGACGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAGAGCGAAGATTTGCTTAAGATTGGAGCTTTTTTGGTGGTTCCGTTTTGCGTA
TTTCTGGTTTTTTCTTTCTCGAAATTAGATTCGGATTCTTCGTGAGTGTACGGATAATGCATTTCGTAAACAGGTTAGAAATAATTGAAATTATGAACGGTAGGTAAG
Protein sequenceShow/hide protein sequence
MAMVDSSFIFIRVSAVPYPLSNNNNGRKFRITSAKRTQDSDSDYSTSSTQANQLKFPSLRVSNPLLARSVVSILGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVP
FCVFLVFSFSKLDSDSS