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ClCG06G012780 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G012780
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationCG_Chr06:25976254..25976631
RNA-Seq ExpressionClCG06G012780
SyntenyClCG06G012780
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016899784.1 PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]2.4e-3088.98Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M SLKSL+LAALL+SS FVVS SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGS++GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRG--GGGSGYGGGYGSGYGGGHGK
        S GRG  GGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRG--GGGSGYGGGYGSGYGGGHGK

XP_022921886.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]2.6e-3292.8Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRGGGGSGYGGGYGSGYGGGHGK
        SGGRGGGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRGGGGSGYGGGYGSGYGGGHGK

XP_022988598.1 glycine-rich cell wall structural protein 2-like [Cucurbita maxima]2.2e-3191.2Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M  LKSL+LAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRGGGGSGYGGGYGSGYGGGHGK
        SGG GGGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRGGGGSGYGGGYGSGYGGGHGK

XP_023515822.1 counting factor 45-1-like [Cucurbita pepo subsp. pepo]4.2e-3091.2Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLG  GSGSGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRGGGGSGYGGGYGSGYGGGHGK
        SGGRGGGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRGGGGSGYGGGYGSGYGGGHGK

XP_038879831.1 glycine-rich cell wall structural protein 2 [Benincasa hispida]9.9e-3292.13Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLG--GSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAG
        M SLKSL+LAALL+SSLFVVSHSRVARKDLG+DLGGVGVGIGAGIGIGLG  GSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLG--GSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAG

Query:  SGSGGRGGGGSGYGGGYGSGYGGGHGK
        SGSGG GGGGSGYGGGYG GYGGGH K
Subjt:  SGSGGRGGGGSGYGGGYGSGYGGGHGK

TrEMBL top hitse value%identityAlignment
A0A0A0LWP0 Uncharacterized protein4.5e-3089.06Show/hide
Query:  MSSLKSLLLAALLISSLFVV-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG--SSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRA
        M SLKSL+LAALL+SSLFVV S SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSGSGSGSG  SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRA
Subjt:  MSSLKSLLLAALLISSLFVV-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG--SSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRA

Query:  GSGSGGRGGGGSGYGGGYGSGYGGGHGK
        GSGSGGRGG GSGYGGGYGSGYGGGHGK
Subjt:  GSGSGGRGGGGSGYGGGYGSGYGGGHGK

A0A1S4DUX4 glycine-rich cell wall structural protein 2-like1.2e-3088.98Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M SLKSL+LAALL+SS FVVS SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGS++GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRG--GGGSGYGGGYGSGYGGGHGK
        S GRG  GGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRG--GGGSGYGGGYGSGYGGGHGK

A0A5A7T0K2 Glycine-rich cell wall structural protein 2-like1.2e-3088.98Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M SLKSL+LAALL+SS FVVS SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGS++GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRG--GGGSGYGGGYGSGYGGGHGK
        S GRG  GGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRG--GGGSGYGGGYGSGYGGGHGK

A0A6J1E2L6 glycine-rich cell wall structural protein 2-like1.3e-3292.8Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M S KSLLLAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRGGGGSGYGGGYGSGYGGGHGK
        SGGRGGGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRGGGGSGYGGGYGSGYGGGHGK

A0A6J1JMR8 glycine-rich cell wall structural protein 2-like1.1e-3191.2Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG
        M  LKSL+LAA+L+SSL VVS SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGS SSSSSSSSSSSSSSGSGSD+GSEAGSYAGSRAGSG
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSG

Query:  SGGRGGGGSGYGGGYGSGYGGGHGK
        SGG GGGGSGYGGGYGSGYGGGHGK
Subjt:  SGGRGGGGSGYGGGYGSGYGGGHGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein1.5e-1774.49Show/hide
Query:  LLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSG
        LL  ++ISSL +++ SR+ARKDLGIDLGG+G+G+G G+GIGLG   GSG+G+GSGSGSGS SSSSSSSSSSSSSSGSG  AGS AGS+AGSRAGSGSG
Subjt:  LLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSG

AT4G30460.1 glycine-rich protein2.3e-1868.5Show/hide
Query:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG---SSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRA
        +++  SL+L  L++++  +VS SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GSGSG G   SSSSSSSSSSSSS G G DAGSEAGSYAGS A
Subjt:  MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG---SSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRA

Query:  GSGSGGRGGGGSGYGGGYGSGYGGGHG
        GSGSGGR G G G G G G G+GGG G
Subjt:  GSGSGGRGGGGSGYGGGYGSGYGGGHG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTTTGAAATCCTTGCTTCTTGCTGCTCTGCTTATTTCGTCTCTTTTTGTTGTGTCTCATAGCCGAGTGGCCAGGAAAGATTTGGGCATTGACTTGGGTGGGGT
GGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCCGGCTCGGGCTCGGGCTCGGGCTCTGGCTCTGGATCTAGTTCCAGTTCGAGTTCTAGTT
CTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACGCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGCTCTGGGTCGGGTGGTCGTGGAGGAGGAGGGTCGGGC
TATGGTGGAGGATATGGATCAGGTTATGGAGGAGGACATGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTTTGAAATCCTTGCTTCTTGCTGCTCTGCTTATTTCGTCTCTTTTTGTTGTGTCTCATAGCCGAGTGGCCAGGAAAGATTTGGGCATTGACTTGGGTGGGGT
GGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTTGGTGGAAGTGGCTCCGGCTCGGGCTCGGGCTCGGGCTCTGGCTCTGGATCTAGTTCCAGTTCGAGTTCTAGTT
CTAGCTCTTCTTCTTCTGGGTCGGGTTCCGACGCTGGATCTGAAGCAGGCTCGTATGCAGGGTCTCGAGCGGGCTCTGGGTCGGGTGGTCGTGGAGGAGGAGGGTCGGGC
TATGGTGGAGGATATGGATCAGGTTATGGAGGAGGACATGGAAAATGA
Protein sequenceShow/hide protein sequence
MSSLKSLLLAALLISSLFVVSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSSSSSSSSSSSSSSGSGSDAGSEAGSYAGSRAGSGSGGRGGGGSG
YGGGYGSGYGGGHGK