CuGenDBv2

Gene ID	ClCG06G012800
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	glycine-rich cell wall structural protein 2-like
Genome location	CG_Chr06:26006449..26008278
RNA-Seq Expression	ClCG06G012800
Synteny	ClCG06G012800
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146660.2 glycine-rich cell wall structural protein 2 [Cucumis sativus]

1.4e-19

79.2

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG
        ++ RVARKDLGIDLGGVGVGLG GIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG

Query:  GGWGRGG---------GEGHGYGGG
        GG GRGG         GEGHGYG G
Subjt:  GGWGRGG---------GEGHGYGGG

XP_008443813.1 PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]

9.5e-21

77.1

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG
        ++ RVARKDLGIDLGG+GVGLGAGIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG

Query:  GGWGRGG--------------GEGHGYGGGN
        GG GRGG              GEGHGYGGGN
Subjt:  GGWGRGG--------------GEGHGYGGGN

XP_022921883.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata]

8.0e-20

78.69

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG
        +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGGG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG

Query:  WGRGG--------GEGHGYGGG
         GRG         GEGHGYG G
Subjt:  WGRGG--------GEGHGYGGG

XP_023515819.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo]

4.0e-19

77.87

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG
        +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGS SG NRNGGSGSGSGYGGG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG

Query:  WGRGG--------GEGHGYGGG
         GRG         GEGHGYG G
Subjt:  WGRGG--------GEGHGYGGG

XP_038879748.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]

1.5e-21

80.8

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGS--GSGGNRNGGSGSGSGYGGGWGRG
        ++ RVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSS S SSSSSSGSGAGSEAGSYAGS AGS  GSGGNRNGGSGSG+GYGGG GRG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGS--GSGGNRNGGSGSGSGYGGGWGRG

Query:  G--------------GEGHGYGGGN
        G              GEGHGYGGGN
Subjt:  G--------------GEGHGYGGGN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTK9 Uncharacterized protein

6.6e-20

79.2

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG
        ++ RVARKDLGIDLGGVGVGLG GIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG

Query:  GGWGRGG---------GEGHGYGGG
        GG GRGG         GEGHGYG G
Subjt:  GGWGRGG---------GEGHGYGGG

A0A1S3B9N0 glycine-rich cell wall structural protein 2-like

4.6e-21

77.1

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG
        ++ RVARKDLGIDLGG+GVGLGAGIGLG+G    GSGSGSGSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNRNGGSG GSGYG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYG

Query:  GGWGRGG--------------GEGHGYGGGN
        GG GRGG              GEGHGYGGGN
Subjt:  GGWGRGG--------------GEGHGYGGGN

A0A6J1C497 putative glycine-rich cell wall structural protein 1

2.8e-18

77.78

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG---GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGG
        +++RVARKDLGIDLGGVGVGLGAGIGLG G   GSG+G+GSGSGS SSSSSSSYSSSSSSGSGAGSE    AGSYAGSRAGSGSGGNR  GSGSGSGYGG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG---GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE----AGSYAGSRAGSGSGGNRNGGSGSGSGYGG

Query:  GWGRGG----------GEGHGYGGGN
        G GRG           GEGHGYGGGN
Subjt:  GWGRGG----------GEGHGYGGGN

A0A6J1E521 putative glycine-rich cell wall structural protein 1 isoform X3

3.9e-20

78.69

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG
        +++RVARKDLG+DLGG+GVG+G GIGLGLG      GSGSGSGSGSGSSSSSSSSSYSSSS SGSGAGSEAGSYAGSRAGSGSG NRNGGSGSGSGYGGG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG------GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGG

Query:  WGRGG--------GEGHGYGGG
         GRG         GEGHGYG G
Subjt:  WGRGG--------GEGHGYGGG

A0A6J1JK06 putative glycine-rich cell wall structural protein 1 isoform X2

6.2e-18

79.28

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG--GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRG
        +++RVARKDLG+DLGG+GVG+G GIGLGLG  GSGSGSGSGSGS SSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSG NRNGG G G G+      G
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG--GSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRG

Query:  GGEGHGYGGGN
         GEG GYGGGN
Subjt:  GGEGHGYGGGN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G30450.1 glycine-rich protein

1.1e-14

76.47

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG-----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSG--AGSEAGSYAGSRAGSGSG
        T+SR+ARKDLGIDLGG+G+GLG G+G+GLG     G+G+GSGSGSGS SSSSSSS SSSSSSGSG  AGS AGS+AGSRAGSGSG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLG-----GSGSGSGSGSGSSSSSSSSSYSSSSSSGSG--AGSEAGSYAGSRAGSGSG

AT4G30460.1 glycine-rich protein

6.3e-15

71.3

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Query:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGS----SSSSSSSSYSSSSSSGSG---AGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGG
        ++SRVARKDLG+DLGG+G G+G GIG+G GGSGSG+G+GSGS    SSSSSSSS SSSSSSG G   AGSEAGSYAGS AGSGSGG    G G GSG GG
Subjt:  TKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGS----SSSSSSSSYSSSSSSGSG---AGSEAGSYAGSRAGSGSGGNRNGGSGSGSGYGG

Query:  GWGRGGGEGHGYGGG
        G G GGG G G GGG
Subjt:  GWGRGGGEGHGYGGG

Sequences

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CDS sequence

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ATGTTATTGTTTTCATTTAAAATTTTAGACACAAACATTTTCGGTACTCTCATGCATCAAAATATTGGTGACGTAAATTTGGAGTGCACTAAAATTAGTGGAGAA
ACCGAGGAGGAGTGGGCAACAAAAAGTCGAGTCGCCAGAAAGGATCTCGGGATTGACCTTGGGGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTTA
GGTGGAAGTGGTTCTGGCTCCGGTTCTGGCTCTGGGTCGAGTTCATCTTCATCTTCTTCATCATACTCCTCCAGCTCAAGCTCTGGGTCCGGAGCTGGGTCCGAA
GCTGGCTCGTACGCAGGGTCTCGAGCAGGGTCAGGTTCGGGTGGAAACAGGAATGGAGGGTCGGGATCTGGTTCGGGATATGGCGGAGGTTGGGGCAGAGGAGGC
GGTGAAGGTCATGGCTATGGAGGAGGCAACTAA

mRNA sequence

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Protein sequence

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MLLFSFKILDTNIFGTLMHQNIGDVNLECTKISGETEEEWATKSRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSE
AGSYAGSRAGSGSGGNRNGGSGSGSGYGGGWGRGGGEGHGYGGGN

ClCG06G012800 (gene) of Watermelon (Charleston Gray) v2.5 genome