; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG06G013040 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG06G013040
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationCG_Chr06:26302370..26307535
RNA-Seq ExpressionClCG06G013040
SyntenyClCG06G013040
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0006952 - defense response (biological process)
GO:0007205 - protein kinase C-activating G protein-coupled receptor signaling pathway (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0004143 - diacylglycerol kinase activity (molecular function)
GO:0003951 - NAD+ kinase activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR027078 - Small nuclear ribonucleoprotein E
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653153.1 hypothetical protein Csa_019571 [Cucumis sativus]4.0e-4668.52Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT--------------
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMN+              
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT--------------

Query:  -------------VWEERLDYEAKENFGDNPSEGGGGRWDTYMGSGNHTPLGQLTIIFCLQL
                     VWEERLDYE  +   +     GG    T+MGSGNH  L +LTI+FCLQL
Subjt:  -------------VWEERLDYEAKENFGDNPSEGGGGRWDTYMGSGNHTPLGQLTIIFCLQL

OIS97104.1 hypothetical protein A4A49_04200 [Nicotiana attenuata]5.8e-3795.45Show/hide
Query:  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKS+K LGRILLKGDNITLMMNT
Subjt:  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

XP_022921760.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata]3.4e-3798.84Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

XP_038880616.1 small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]2.4e-4695.33Show/hide
Query:  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDN
        GLGFRFLSPED L L  ISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDN
Subjt:  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDN

Query:  ITLMMNT
        ITLMMNT
Subjt:  ITLMMNT

XP_038880617.1 small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida]2.4e-4695.33Show/hide
Query:  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDN
        GLGFRFLSPED L L  ISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDN
Subjt:  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDN

Query:  ITLMMNT
        ITLMMNT
Subjt:  ITLMMNT

TrEMBL top hitse value%identityAlignment
A0A1J6IPM5 Sm protein E2.8e-3795.45Show/hide
Query:  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKS+K LGRILLKGDNITLMMNT
Subjt:  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

A0A6J1E6Q3 Small nuclear ribonucleoprotein E1.7e-3798.84Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

A0A6J1F0M2 Small nuclear ribonucleoprotein E3.7e-3797.67Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKK+LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

A0A6J1ICX7 Small nuclear ribonucleoprotein E3.7e-3797.67Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKK+LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

A0A6J1JLU4 Small nuclear ribonucleoprotein E1.7e-3798.84Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E1.0e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E1.0e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E1.0e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E1.0e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E1.0e-2872.84Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein5.6e-3890.7Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV +KK ++K LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein2.1e-2988.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV +KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALG

AT4G30330.1 Small nuclear ribonucleoprotein family protein5.6e-3891.76Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV +KKK++K LGRILLKGDNITLMMN
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMN

AT5G48870.1 Small nuclear ribonucleoprotein family protein4.8e-0535.14Show/hide
Query:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKA--LGRILLKGDNITLMM
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L +ILL G+NI +++
Subjt:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKA--LGRILLKGDNITLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGTCGCCACGCCCGTCGTTCAAAGTTGCCTTGTCGTGCCGCCCAAAGCCTCGCCTCAACGCGCCGCCACCTCGCTGTCGTCGTCCAAAGTCGCCTCGCCG
CCGTCCGTCCAAGTCCACCTGGGTTTAGGGTTTCGTTTCTTATCGCCTGAAGATCCTCTCACCCTCAGTACAATTTCGATAGCCATGGCGAGCACCAAAGTGCAG
AGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGA
ATTATTGGATTTGATGAGTATATGAATTTAGTGCTTGATGATGCTGAGGAAGTTCATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGA
GACAATATTACATTAATGATGAACACGGTGTGGGAAGAAAGATTGGACTACGAAGCAAAAGAGAATTTTGGAGATAACCCAAGTGAAGGTGGTGGTGGCCGGTGG
GACACATACATGGGGTCAGGGAATCACACCCCTCTAGGCCAGTTAACTATTATCTTCTGCTTGCAACTGGGAGAAATTGTTGATGATAGATTGAATAATATGATT
CTGTCACTCCCGATTCTTTGGGAATGCCTGGCTGTTGCTGACACCTTCGCCCATCCTTGTCGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAAATT
TCAGGAAACACAAAGGCCCCTCACAAAAACAATCTACAGTGCACATTCTATTCACACTTGGAGGAGTCTGATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGTCGCCACGCCCGTCGTTCAAAGTTGCCTTGTCGTGCCGCCCAAAGCCTCGCCTCAACGCGCCGCCACCTCGCTGTCGTCGTCCAAAGTCGCCTCGCCG
CCGTCCGTCCAAGTCCACCTGGGTTTAGGGTTTCGTTTCTTATCGCCTGAAGATCCTCTCACCCTCAGTACAATTTCGATAGCCATGGCGAGCACCAAAGTGCAG
AGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGA
ATTATTGGATTTGATGAGTATATGAATTTAGTGCTTGATGATGCTGAGGAAGTTCATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGA
GACAATATTACATTAATGATGAACACGGTGTGGGAAGAAAGATTGGACTACGAAGCAAAAGAGAATTTTGGAGATAACCCAAGTGAAGGTGGTGGTGGCCGGTGG
GACACATACATGGGGTCAGGGAATCACACCCCTCTAGGCCAGTTAACTATTATCTTCTGCTTGCAACTGGGAGAAATTGTTGATGATAGATTGAATAATATGATT
CTGTCACTCCCGATTCTTTGGGAATGCCTGGCTGTTGCTGACACCTTCGCCCATCCTTGTCGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAAATT
TCAGGAAACACAAAGGCCCCTCACAAAAACAATCTACAGTGCACATTCTATTCACACTTGGAGGAGTCTGATGCTTAG
Protein sequenceShow/hide protein sequence
MVVATPVVQSCLVVPPKASPQRAATSLSSSKVASPPSVQVHLGLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGR
IIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNTVWEERLDYEAKENFGDNPSEGGGGRWDTYMGSGNHTPLGQLTIIFCLQLGEIVDDRLNNMI
LSLPILWECLAVADTFAHPCRDGTIRAEGYIDSEISGNTKAPHKNNLQCTFYSHLEESDA