; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG07G006010 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G006010
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description30S ribosomal protein S17, chloroplastic
Genome locationCG_Chr07:9818194..9825460
RNA-Seq ExpressionClCG07G006010
SyntenyClCG07G006010
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]9.0e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]2.2e-4595.15Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQ  Q VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]9.0e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]9.0e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

XP_022989005.1 uncharacterized protein LOC111486195 [Cucurbita maxima]1.7e-4594.17Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ NQ+VSDK +VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic4.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic4.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic4.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIY+PPSQ NQ+VSDK +VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic8.2e-4694.17Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ NQ+VSDK +VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S175.7e-2055.42Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++ E P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPP

B1I1J7 30S ribosomal protein S177.5e-2062.67Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+ K W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S171.4e-1854.79Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S171.1e-1852.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S171.4e-1858.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein5.8e-3671.57Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK KHW+VAEI++KARIY P + A  + +  S  SA 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

Query:  ST
        +T
Subjt:  ST

AT1G79850.1 ribosomal protein S177.2e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein3.2e-3470Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSK KHW+V+EI++KARIY P + A  + S  S    P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.0e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGA
TTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAA
mRNA sequenceShow/hide mRNA sequence
CCCTATTTAACGTTCAGCGACCTCTGCCCCCCCGTTACCAGCTACGGTACTCCGCCCCACCGCGCGCCGTTCCTATCCAGACAGTTTCTGAATCCTCGAGTTTGTAGCAG
CTTGAAGCTTAAAAGGGCTGTTGGGTTTTCTTTTGGGGGTTGGGTTTTCAATTGGAGGGCCAAGATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAAT
CGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGT
GACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCA
GATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAAGGGGAAACTACTGCAGACCACATCGAGACCGAGTCAGATCGAAAAGTTCGCAATGCACTGGAAA
ACCAAAGAACAAAAACTCTGGAAAATGAAGTTTTGTAAGCAGTATGTTTCTCATGTCAAAGATTTGTAGTTACATTATTATTACCGTCTTGTACTGTTTTGTAAACCTTC
TTTTCCTATGAGCATTTATCCCCACGATTTGTTGTGAGGTTGTTAAAAATGCATATTCAGAAAGGTTCCGTCCATTGGTAGGCATGTCTCCAGGCGGAACAAAGAAGAAG
AGATATTAGGATCTATTTGGTAGAGAATTTTAAAACAAAGAATTTAATAAACATAATTGTATTTCATGTTTTCAAATATGTAGC
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT