; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG07G006140 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G006140
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCG_Chr07:10340986..10341916
RNA-Seq ExpressionClCG07G006140
SyntenyClCG07G006140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038874978.1 putative uncharacterized protein DDB_G0279653 [Benincasa hispida]2.2e-1446.02Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG
        ME  Y+ L  ++Q  A+A+A GG +DKTYTEAK ILDRISRN +DW D GY  R  +R+ N       +++  L AQ+  +T+LLQTMA+NQ  +     
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG

Query:  QVNAVNQVNAAGC
        Q NA  Q+ A  C
Subjt:  QVNAVNQVNAAGC

XP_038880418.1 uncharacterized protein LOC120072068 [Benincasa hispida]4.9e-1441.48Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIGGG-G
        ME  Y+GL  ++Q  A+A+ AGGL+ KTYTEAK ILDR+SRN ++W D+GY      Q  A  A    N++ +L AQ+ T+T+LLQT+ + Q ++     
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIGGG-G

Query:  QVNAVNQVNAAGC-----------RTLNQQFIFPI
        Q NA+ QV A  C             LNQQ ++ I
Subjt:  QVNAVNQVNAAGC-----------RTLNQQFIFPI

XP_038889341.1 uncharacterized protein LOC120079252 [Benincasa hispida]5.4e-1344.25Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGG-GG
        ME  Y+GL  A+Q   +A+A GG +DKTYTE+K ILDRISRN +DW D+ Y  R   R+   T      ++  L AQ+ T+T++LQ+MA+NQ  I     
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGG-GG

Query:  QVNAVNQVNAAGC
        Q  A+  V   GC
Subjt:  QVNAVNQVNAAGC

XP_038896595.1 uncharacterized protein LOC120084850 [Benincasa hispida]9.9e-1543.7Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG
        ME  Y+GL  + Q  A+A+ A GL+DKTYTEAK ILDRISRN ++W  +GY   G  Q    GA    +++  L  Q+TTMT LLQTMA+ Q ++     
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG

Query:  QVNAVNQVNAAGC-----------RTLNQQFIFPI
        Q NA+  V A  C             LNQQF++ I
Subjt:  QVNAVNQVNAAGC-----------RTLNQQFIFPI

XP_038896708.1 uncharacterized protein LOC120084968 [Benincasa hispida]2.4e-1650.93Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG
        ME  Y+GL  ++Q  ANA+AAGG +DKTYTEAK ILDRISRN +DWED GY   G  +  A  A    N++  L AQ+  +T+LL  MA+NQ ++  G  
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGG

Query:  QVNAVNQV
        Q NA+ QV
Subjt:  QVNAVNQV

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein4.8e-0735.51Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGGGGQV
        ME+ Y GL++ +    N    GG+L  +Y + K  LD +S N ++W+D G+    R +       + + VV LQ Q+  M NLLQ+M L+Q N      +
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGGGGQV

Query:  NAVNQVN
        +AV QVN
Subjt:  NAVNQVN

A0A5D3CC26 Uncharacterized protein1.2e-0531.43Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRR-----QNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI
        ME  Y GL++ +  +AN    GG+L  +Y + K +LD ++ N ++W D  + SR+  R     +       + + +VALQ QV  M N+LQ+MAL Q N+
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRR-----QNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI

Query:  --GGGGQVNAVNQVNAAGCRTLNQQFIFPIPQLILTHQRN
               V  VN++   GCR  +     P+   I+ + +N
Subjt:  --GGGGQVNAVNQVNAAGCRTLNQQFIFPIPQLILTHQRN

A0A6J1EEI2 uncharacterized protein LOC1114333942.4e-0634.43Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGG
        ME  Y+GL  A++   +A+A G +L KTY EA +IL+RI+ N+  W D   S  GR+     G  E +++ ++ AQ+ ++TN+LQ +AL Q ++      
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGG

Query:  QVNAVNQVNAAGCRTLNQQFIF
         V  +NQ  A  C    ++  F
Subjt:  QVNAVNQVNAAGCRTLNQQFIF

A0A6J1EQ90 uncharacterized protein LOC1114364116.9e-0633.61Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGG
        ME  Y+GL   ++   +A+A G +L KTY EA +IL+RI+ N+  W D   S  GR+     G  E +++ ++ AQ+ ++TN+LQ +AL Q ++      
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGG

Query:  QVNAVNQVNAAGCRTLNQQFIF
           A+NQ  A  C    ++  F
Subjt:  QVNAVNQVNAAGCRTLNQQFIF

W9RRR5 Retrotrans_gag domain-containing protein7.7e-0537.93Show/hide
Query:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTM
        ME  Y+GL E ++   +AAA G LL K+Y E  +IL+R++ NH  W     S          G  E +++ AL AQV+ +TN+ +TM
Subjt:  MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATATTATATGATGGTTTGACCGAGGCTTCTCAGACCGCTGCAAATGCTGCCGCAGCGGGAGGACTACTGGATAAAACTTATACTGAGGCCAAGAAAATTCTCGA
TAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGCAGGCAAAACAATGCGACGGGAGCACCAGAGCATAATAGTGTTGTTGCGTTAC
AAGCTCAAGTCACCACCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCCGCAGGA
TGCAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTAACCCATCAACGCAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGACG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATATTATATGATGGTTTGACCGAGGCTTCTCAGACCGCTGCAAATGCTGCCGCAGCGGGAGGACTACTGGATAAAACTTATACTGAGGCCAAGAAAATTCTCGA
TAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGCAGGCAAAACAATGCGACGGGAGCACCAGAGCATAATAGTGTTGTTGCGTTAC
AAGCTCAAGTCACCACCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCCGCAGGA
TGCAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTAACCCATCAACGCAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGACG
Protein sequenceShow/hide protein sequence
MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGGGGQVNAVNQVNAAG
CRTLNQQFIFPIPQLILTHQRNKNKLTCKEVYQGKT