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ClCG07G007580 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G007580
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr07:19823480..19827152
RNA-Seq ExpressionClCG07G007580
SyntenyClCG07G007580
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN76211.1 hypothetical protein VITISV_041626 [Vitis vinifera]5.7e-0856.45Show/hide
Query:  KIRLSTPLELNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV----------GDAFDWY
        K+   + L  + PYTKRIDNLR P GYQ  KFQ FDGK NPKQHV          G+AFDWY
Subjt:  KIRLSTPLELNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV----------GDAFDWY

KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

TYK26922.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.8e-0842.27Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DMEM
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E+
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DMEM

TrEMBL top hitse value%identityAlignment
A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.1e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

A0A5A7V6U6 Ty3-gypsy retrotransposon protein1.1e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.1e-0742.71Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DME

A0A5D3DTT7 Ty3-gypsy retrotransposon protein4.7e-0842.27Show/hide
Query:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DMEM
        +L   ++S+ K +   P +     + PYTKRIDNLR PNGYQ  KFQQFDGK NPKQHV                          G+AFDWY D+E+
Subjt:  RLPHCLSSNFKIRLSTPLE----LNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV--------------------------GDAFDWY-DMEM

A5AZ13 Retrotrans_gag domain-containing protein2.8e-0856.45Show/hide
Query:  KIRLSTPLELNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV----------GDAFDWY
        K+   + L  + PYTKRIDNLR P GYQ  KFQ FDGK NPKQHV          G+AFDWY
Subjt:  KIRLSTPLELNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHV----------GDAFDWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCAGTTACAACATTCAACTTCGATTGCCTCACTGTCTCTCCAGTAACTTCAAGATAAGATTATCAACTCCATTGGAGCTCAATATGCCCTATACTAAGAGGAT
TGATAATCTCAGGACGCCAAATGGATATCAATCGCAAAAGTTTCAACAATTCGACGGGAAAGATAATCCCAAACAACACGTTGGGGATGCCTTCGATTGGTATGACATGG
AAATGATTAGGCTTCCATACAGTGTGCTAGCTTCATCACGAACCTGCATTTCAGGAACAGGTCGCTCAGCTTCTGAGTTCTCTGCACTTATTCTTTGGTTTCCTTTAGCG
AAGTTCTCAGTCGAGAATTCTTTGAAGTTCTTCATTGATGGAAGGTGTTGGGAAGATTTGCTTCATGGCTGGACGTTGAGCACTTCCATGCAATCGTTGGAGTTAGATGT
TACCTCAACAACTGGAGGACGGTTGGGTGGAGTAACGGTGGCTGGTTGGAAGAATGGGCGAAAGACAGGGGAAAACGGTTTAGTGGTGGAGGGCGGACCGAAAGAAACAT
GTGAAAATGAAGCTCAAGGGTTAGAAAATATCTCTGGAGCAGGTTGTGGCGCACTCGGAGATGAAGATGATGATGGAGTAGATGATAGGCGGCTAGATGAAGCAAATAAG
CACTCGAGTGCTTCAGGGAAAAAGCATAGACTCAAAAGACGACCTTTCAACGCAAGCTCAGTTATGCTTGTGTGGGTCATTGGAGCCTTTATTGTAAGCCCCACACTTAG
CTTTGGTAAAGTTGTGGAGAGTTCGAGTCGTTTCCATGGTGAAACTGAAGCTGGAATAGAGAGCTTGGCTGGTGTCGCGCAATCCGAGCATGGTCTGGTGTTTAGAGAAG
AGCGAGTTGAGGAGATTGATGCCGAGGGACAATATGAGAAGGCACTTGAGGGTTTGAAATGCCGAGGGACGATATGTGAAGGCATTTGTGCCGAGGGCCTCGTGTTGAGT
GCGTTGACCTTCGCTCCACCACAGCTAGAAAAGGATAATTGTATCACTTATGTTCTTATGGCACTTGAGTATCCAAGGGATCCAGTACTGAGGGACTGGGAGATGCTGAG
AAATATTGACGTTGGGTGCGGTGAGCTTCGCTCAGCCTCAACTAGGGAAGGAGATTTAAGGAAACGGTTTTTGAATAATGTTTCCATAGATAATCAGATCTCACGTTTTC
CTTGTTTTTCTGTTTTCCAGGTAGCGAGCGAGTTCGGGATACTTAGCCTACGCAAGATCTCGTCTGGGTCCACCAACAGTGTAAAGACAGAGTTATGGTTGACAGTGGAT
GTAGTAAGAGGGTCGGTGTCTGTTGTCATCACACTTCTTTTTGGGTTAGGAGGGTACCTGGGAGCAAAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCAGTTACAACATTCAACTTCGATTGCCTCACTGTCTCTCCAGTAACTTCAAGATAAGATTATCAACTCCATTGGAGCTCAATATGCCCTATACTAAGAGGAT
TGATAATCTCAGGACGCCAAATGGATATCAATCGCAAAAGTTTCAACAATTCGACGGGAAAGATAATCCCAAACAACACGTTGGGGATGCCTTCGATTGGTATGACATGG
AAATGATTAGGCTTCCATACAGTGTGCTAGCTTCATCACGAACCTGCATTTCAGGAACAGGTCGCTCAGCTTCTGAGTTCTCTGCACTTATTCTTTGGTTTCCTTTAGCG
AAGTTCTCAGTCGAGAATTCTTTGAAGTTCTTCATTGATGGAAGGTGTTGGGAAGATTTGCTTCATGGCTGGACGTTGAGCACTTCCATGCAATCGTTGGAGTTAGATGT
TACCTCAACAACTGGAGGACGGTTGGGTGGAGTAACGGTGGCTGGTTGGAAGAATGGGCGAAAGACAGGGGAAAACGGTTTAGTGGTGGAGGGCGGACCGAAAGAAACAT
GTGAAAATGAAGCTCAAGGGTTAGAAAATATCTCTGGAGCAGGTTGTGGCGCACTCGGAGATGAAGATGATGATGGAGTAGATGATAGGCGGCTAGATGAAGCAAATAAG
CACTCGAGTGCTTCAGGGAAAAAGCATAGACTCAAAAGACGACCTTTCAACGCAAGCTCAGTTATGCTTGTGTGGGTCATTGGAGCCTTTATTGTAAGCCCCACACTTAG
CTTTGGTAAAGTTGTGGAGAGTTCGAGTCGTTTCCATGGTGAAACTGAAGCTGGAATAGAGAGCTTGGCTGGTGTCGCGCAATCCGAGCATGGTCTGGTGTTTAGAGAAG
AGCGAGTTGAGGAGATTGATGCCGAGGGACAATATGAGAAGGCACTTGAGGGTTTGAAATGCCGAGGGACGATATGTGAAGGCATTTGTGCCGAGGGCCTCGTGTTGAGT
GCGTTGACCTTCGCTCCACCACAGCTAGAAAAGGATAATTGTATCACTTATGTTCTTATGGCACTTGAGTATCCAAGGGATCCAGTACTGAGGGACTGGGAGATGCTGAG
AAATATTGACGTTGGGTGCGGTGAGCTTCGCTCAGCCTCAACTAGGGAAGGAGATTTAAGGAAACGGTTTTTGAATAATGTTTCCATAGATAATCAGATCTCACGTTTTC
CTTGTTTTTCTGTTTTCCAGGTAGCGAGCGAGTTCGGGATACTTAGCCTACGCAAGATCTCGTCTGGGTCCACCAACAGTGTAAAGACAGAGTTATGGTTGACAGTGGAT
GTAGTAAGAGGGTCGGTGTCTGTTGTCATCACACTTCTTTTTGGGTTAGGAGGGTACCTGGGAGCAAAAGCTTGA
Protein sequenceShow/hide protein sequence
MKTSYNIQLRLPHCLSSNFKIRLSTPLELNMPYTKRIDNLRTPNGYQSQKFQQFDGKDNPKQHVGDAFDWYDMEMIRLPYSVLASSRTCISGTGRSASEFSALILWFPLA
KFSVENSLKFFIDGRCWEDLLHGWTLSTSMQSLELDVTSTTGGRLGGVTVAGWKNGRKTGENGLVVEGGPKETCENEAQGLENISGAGCGALGDEDDDGVDDRRLDEANK
HSSASGKKHRLKRRPFNASSVMLVWVIGAFIVSPTLSFGKVVESSSRFHGETEAGIESLAGVAQSEHGLVFREERVEEIDAEGQYEKALEGLKCRGTICEGICAEGLVLS
ALTFAPPQLEKDNCITYVLMALEYPRDPVLRDWEMLRNIDVGCGELRSASTREGDLRKRFLNNVSIDNQISRFPCFSVFQVASEFGILSLRKISSGSTNSVKTELWLTVD
VVRGSVSVVITLLFGLGGYLGAKA