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ClCG07G008105 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G008105
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-directed DNA polymerase-like protein
Genome locationCG_Chr07:21595579..21596178
RNA-Seq ExpressionClCG07G008105
SyntenyClCG07G008105
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR005162 - Retrotransposon gag domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037938.1 uncharacterized protein E6C27_scaffold36G001170 [Cucumis melo var. makuwa]3.6e-5258.59Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKLMK+RFLPPNYEQTLY  YQNC+QG RK A YIEEFHRLGARTNLME+EQHLIARF GGLRMD++EKV+LQ F +L+E I++ ET+EEM +  SK  
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIEG
        +R+G W+ S S K T+  +A N        K  +K+    ++E+ TEA  K R  NPYNRP  G C+RC Q GH S S PQ KTVA+++DEE  +I+G
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIEG

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]9.8e-5863.68Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKL+K RFLPPNYEQTLY  YQNC+QG R VA YIEEFHRL ARTNL ENEQH +ARFVGGLR DIKEKV LQPF FL+EAISFAET+EEM  I SKNL
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED
        +RR  W+ + +K +T    + +     + AKGK+ + QE A E++ E   K   QN Y+RPSLGKCFRC Q GHLS++CPQRKT+A  E+
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]4.4e-5864.21Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKL+K RFLPPNYEQTLY  YQNC+QG R VA YIEEFHRL ARTNL ENEQH +ARFVGGLR DIKEKV LQPF FL+EAISFAET+EEM  I SKNL
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED
        +RR  W+ + +K +T    + +     + AKGK+ + QE A E++ E   K   QN Y+RPSLGKCFRC Q GHLSN+CPQRKT+A  E+
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]1.5e-5864.74Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKL+K RFLPPNYEQTLY  YQNC+QG R VA YIEEFHRL ARTNL ENEQH +ARFVGGLR DIKEKV LQPF FL+EAISFAET+EEM  I SKNL
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED
        +RR  W+ + +K +T    + +     + AKGK+ + QE A E++ E   K   QN Y+RPSLGKCFRC Q GHLSN+CPQRKT+A  ED
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLED

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]5.2e-5961.78Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKL+K RFLPPNYEQTLY  YQNC+QG+R V  YIEEFHRL ARTNL ENEQH IARFVGGLR DIKEKV+LQP  FL+EAIS AET+EEM  + +K +
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDE
        +RR  W+ + +KK +  +K  +    P   KGK+ + Q    E++ E +NK + QN Y RPSLGKCFRC Q GHLSNSCPQRKT+A  E+E
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDE

TrEMBL top hitse value%identityAlignment
A0A5A7T256 Reverse transcriptase1.0e-4455.93Show/hide
Query:  YCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWKASMSKKQTIVN
        Y  YQNC+QGS+ VA YIEEFHRL AR NL ENEQH IARF+GGLR DIKEKV+L  F  L+EAIS AET+EEM  +  KN +RR  W+ + SKKQ+   
Subjt:  YCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWKASMSKKQTIVN

Query:  KAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENM
        K         + KGK  ++QE    ++ E++ +G+ QN Y RPSLGKCFRC + GHLSN+C QRKT+A  EDE+  M
Subjt:  KAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENM

A0A5D3C3X9 Reverse transcriptase1.7e-4756.28Show/hide
Query:  EQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWKASMSKKQ
        + TLY  YQNC+QG+R VA+YI+EFH LGAR NL ENEQH IARF+GGLR DIKEK++LQPF FL+EAISFAET+EEMN I +KN S             
Subjt:  EQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWKASMSKKQ

Query:  TIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIE
                     +  KGK+ E Q+ A++++ E VNKG+ QN YNRPSLGKCFRC Q GH SN+CPQRKT+A  + EE++  E
Subjt:  TIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIE

A0A5D3D655 Retrotrans_gag domain-containing protein1.8e-5258.59Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKLMK+RFLPPNYEQTLY  YQNC+QG RK A YIEEFHRLGARTNLME+EQHLIARF GGLRMD++EKV+LQ F +L+E I++ ET+EEM +  SK  
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIEG
        +R+G W+ S S K T+  +A N        K  +K+    ++E+ TEA  K R  NPYNRP  G C+RC Q GH S S PQ KTVA+++DEE  +I+G
Subjt:  SRRGPWKASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIEG

A0A5D3DGR0 Reverse transcriptase2.8e-5056.41Show/hide
Query:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL
        MKKLMK+RF+PPNYEQTLY  YQNC+QG RK A YIEEFHRLG RTNLME E+HLI+ FVGGLR D+KEKV+LQPF  L+EAI++AET+EEM +  +K+ 
Subjt:  MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNL

Query:  SRRGPWKASMSKKQTIVN-KAANPTHPPSLAKGKDKEV-QEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEE
        +R+ PW+ S SKK T  N K  N T         +K V QEE+  ++     + + +NPY RP  G C+RC Q+GH SN CPQRKT+A  +D ++
Subjt:  SRRGPWKASMSKKQTIVN-KAANPTHPPSLAKGKDKEV-QEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEE

A0A5D3E417 Transposon Ty3-I Gag-Pol polyprotein isoform X14.2e-4654.79Show/hide
Query:  PPNYEQTL---YCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWK
        P +Y Q +   Y  YQNC+QGS+ VA YIEEFHRLGAR NL ENEQH IARF+GGLR DIKEKV+L  F  L+EAIS AET+EEM  +  KN +RR  W+
Subjt:  PPNYEQTL---YCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWK

Query:  ASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENM
         + SKKQ+   K         + KGK  ++QE    ++ E++ +G+ QN Y RPSLGKCFRC + GHLSN+C QRKT+A  EDE+  M
Subjt:  ASMSKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTGATGAAAGAACGCTTCCTACCTCCCAACTATGAACAAACCCTCTATTGTTTGTATCAAAATTGTAAGCAAGGATCTCGGAAAGTGGCTAATTACATTGA
AGAGTTCCATCGGTTGGGTGCAAGAACAAACCTAATGGAGAATGAACAACACCTAATCGCACGATTTGTGGGAGGTCTTCGGATGGACATAAAAGAAAAGGTAGAACTCC
AACCTTTTCACTTTCTTGCTGAGGCTATTTCTTTTGCTGAAACACTGGAAGAAATGAATGATATTTGGTCCAAGAACTTATCAAGAAGAGGACCTTGGAAGGCATCTATG
AGTAAGAAGCAAACCATTGTGAATAAGGCAGCAAATCCGACACATCCACCTTCATTAGCTAAAGGAAAGGATAAGGAGGTCCAAGAAGAGGCCGAGGAGCAAAGAACTGA
AGCTGTGAACAAGGGCAGAAGGCAGAATCCTTATAATCGGCCCTCCTTGGGCAAGTGCTTCCGATGTAGTCAAGTTGGCCATCTTTCCAATTCATGTCCTCAACGCAAGA
CAGTTGCTTACTTAGAAGATGAAGAAGAAAATATGATTGAAGGAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTGATGAAAGAACGCTTCCTACCTCCCAACTATGAACAAACCCTCTATTGTTTGTATCAAAATTGTAAGCAAGGATCTCGGAAAGTGGCTAATTACATTGA
AGAGTTCCATCGGTTGGGTGCAAGAACAAACCTAATGGAGAATGAACAACACCTAATCGCACGATTTGTGGGAGGTCTTCGGATGGACATAAAAGAAAAGGTAGAACTCC
AACCTTTTCACTTTCTTGCTGAGGCTATTTCTTTTGCTGAAACACTGGAAGAAATGAATGATATTTGGTCCAAGAACTTATCAAGAAGAGGACCTTGGAAGGCATCTATG
AGTAAGAAGCAAACCATTGTGAATAAGGCAGCAAATCCGACACATCCACCTTCATTAGCTAAAGGAAAGGATAAGGAGGTCCAAGAAGAGGCCGAGGAGCAAAGAACTGA
AGCTGTGAACAAGGGCAGAAGGCAGAATCCTTATAATCGGCCCTCCTTGGGCAAGTGCTTCCGATGTAGTCAAGTTGGCCATCTTTCCAATTCATGTCCTCAACGCAAGA
CAGTTGCTTACTTAGAAGATGAAGAAGAAAATATGATTGAAGGAAGGTAG
Protein sequenceShow/hide protein sequence
MKKLMKERFLPPNYEQTLYCLYQNCKQGSRKVANYIEEFHRLGARTNLMENEQHLIARFVGGLRMDIKEKVELQPFHFLAEAISFAETLEEMNDIWSKNLSRRGPWKASM
SKKQTIVNKAANPTHPPSLAKGKDKEVQEEAEEQRTEAVNKGRRQNPYNRPSLGKCFRCSQVGHLSNSCPQRKTVAYLEDEEENMIEGR