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ClCG07G011090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G011090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSWIB domain-containing protein
Genome locationCG_Chr07:27041272..27043004
RNA-Seq ExpressionClCG07G011090
SyntenyClCG07G011090
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3951992.1 hypothetical protein CMV_022410 [Castanea mollissima]1.3e-1252.33Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  + K+LSPQFN     N E ++  DN+
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

KAG6577105.1 hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1782.46Show/hide
Query:  KIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHG
        KIQLK  L KFLGIPLV+PRGDIPILI+KFLK YQ QSPGIGKD  WEENLKA LHG
Subjt:  KIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHG

KAG7015106.1 hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1775.41Show/hide
Query:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHG
        ++  KIQLK  L KFLGIPL++PRGDIPILI+KFLK YQ QSPGIGKD  WEENLKA LHG
Subjt:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHG

XP_022136393.1 uncharacterized protein LOC111008113 [Momordica charantia]2.5e-3276.84Show/hide
Query:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        ++  K+Q K  L KFLGIPLVSPRGDIPILISKFLKLYQPQSPG+ KD+ WEENLKAIL GK G+G+  VNKILSPQFND SLRNMEM RQKD R
Subjt:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

XP_030947627.1 uncharacterized protein LOC115971741 [Quercus lobata]1.0e-1252.33Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  + K+LSPQFN     N E ++  DN+
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

TrEMBL top hitse value%identityAlignment
A0A2N9FY31 SWIB domain-containing protein1.7e-1352.33Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        S   KFLGIP  S R    +LISKFLKLY  QSPGI KD  WE+NL  +LHGK  +G+  + K+LSPQFN     N E ++ +DN+
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

A0A4P1QT43 SWIB domain-containing protein1.4e-1253.85Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNME
        S L KF+GIP  S R +I ++ISKFLKLY  +SPGI KDK WE+NL+ +L GK  IG   V KILSP+F+  ++   E
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNME

A0A6A1WNV5 SWIB domain-containing protein1.4e-1255.56Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDP
        S   KFLGIP  + R    +LISKF++LY  +SPGI KD  WEENLK +LHGK  +G+  + K+LSPQFN P
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDP

A0A6J1C7G5 uncharacterized protein LOC1110081131.2e-3276.84Show/hide
Query:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        ++  K+Q K  L KFLGIPLVSPRGDIPILISKFLKLYQPQSPG+ KD+ WEENLKAIL GK G+G+  VNKILSPQFND SLRNMEM RQKD R
Subjt:  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

A0A7N2N264 SWIB domain-containing protein4.8e-1352.33Show/hide
Query:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR
        S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  + K+LSPQFN     N E ++  DN+
Subjt:  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.4e-0436.36Show/hide
Query:  RGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQF
        RG     + +++KL+  Q+P   K+ + ++ LK I  GK  +GIT + K+LSP F
Subjt:  RGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTC
AAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTT
AACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATT
GTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTC
AAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTT
AACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATT
GTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA
Protein sequenceShow/hide protein sequence
MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNRSSGIYLGFSI
VLYMFKPHVKPLDLCP