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ClCG07G012030 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G012030
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCG_Chr07:28371747..28373248
RNA-Seq ExpressionClCG07G012030
SyntenyClCG07G012030
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]1.4e-1457.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]1.4e-1457.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

KAF3624581.1 DNA-directed RNA polymerase subunit beta [Capsicum annuum]8.1e-1553.4Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSW-----------IFD
        + P++D+       SVDM+FNPLGV SRMN+  I +    L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T++ W           IFD
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSW-----------IFD

Query:  GRT
        GRT
Subjt:  GRT

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]1.4e-1457.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]1.4e-1457.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

TrEMBL top hitse value%identityAlignment
A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta6.7e-1557.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta6.7e-1557.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

A0A218KG28 DNA-directed RNA polymerase subunit beta6.7e-1557.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

A0A249RZI0 DNA-directed RNA polymerase subunit beta6.7e-1557.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta6.7e-1557.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

SwissProt top hitse value%identityAlignment
Q2MIJ5 DNA-directed RNA polymerase subunit beta6.9e-1755.06Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+LYEASK T + W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

Q33C46 DNA-directed RNA polymerase subunit beta6.9e-1755.06Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+LYEASK T + W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

Q3C1G7 DNA-directed RNA polymerase subunit beta6.9e-1755.06Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+LYEASK T + W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

Q4VZP1 DNA-directed RNA polymerase subunit beta1.8e-1757.3Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ERY Q+ASRKLV FS+LYEASK T S W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

Q8S8X9 DNA-directed RNA polymerase subunit beta6.9e-1755.06Show/hide
Query:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+LYEASK T + W+F+
Subjt:  MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta2.4e-1762.16Show/hide
Query:  VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD
        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+LYEASK T + W+F+
Subjt:  VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAAC
GGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGC
ATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAAC
GGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGC
ATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA
Protein sequenceShow/hide protein sequence
MFPKEDISVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFDGRTKTLNNLL