; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG07G013490 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G013490
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationCG_Chr07:29916166..29919168
RNA-Seq ExpressionClCG07G013490
SyntenyClCG07G013490
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]4.0e-11269.37Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA T
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        AETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]1.2e-11169.16Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T 
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI

Query:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP
         S KL          G V      DSENESE VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Subjt:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP

Query:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]1.6e-10867.57Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKP KETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPT
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        AE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]4.0e-10466.07Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKPAK TI+FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP 
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]1.1e-11470.27Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPGIGNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENE E VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPT
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        AETEKGPEN LGESQQPPADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 61.9e-11269.37Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA T
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        AETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 65.6e-11269.16Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T 
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI

Query:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP
         S KL          G V      DSENESE VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Subjt:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP

Query:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 65.6e-11269.16Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T 
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTI

Query:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP
         S KL          G V      DSENESE VKPAKETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Subjt:  FSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP

Query:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 67.6e-10967.57Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKP KETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPT
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        AE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 64.3e-10466.07Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFE GP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV   + Y                                          I  A T  
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIF

Query:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT
        S KL          G V      DSENESE VKPAKETI+FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP 
Subjt:  SYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT

Query:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Subjt:  AETEKGPENQLGESQQPPADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 62.8e-7653.5Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHS
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV   + N     T      A S +    + L  C   +    +  L++    Y L IF    + 
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHS

Query:  EIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE
        E     +YG   +   FD+EN++E    KPA ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY        +
Subjt:  EIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE

Query:  KGPENQLGESQQPPADPIIDQGPAKRMKF
        +    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  KGPENQLGESQQPPADPIIDQGPAKRMKF

O75586 Mediator of RNA polymerase II transcription subunit 65.4e-1942.98Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVFHLVN
         IYQAP L +V  +RV   V+
Subjt:  SIYQAPQLCNVFAARVFHLVN

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 62.1e-2345.08Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G+EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVFHLVNYHS
        YQAP+L  VF +RV   +++ S
Subjt:  YQAPQLCNVFAARVFHLVNYHS

Q5RD94 Mediator of RNA polymerase II transcription subunit 65.4e-1942.98Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVFHLVN
         IYQAP L +V  +RV   V+
Subjt:  SIYQAPQLCNVFAARVFHLVN

Q921D4 Mediator of RNA polymerase II transcription subunit 65.4e-1942.98Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVFHLVN
         IYQAP L +V  +RV   V+
Subjt:  SIYQAPQLCNVFAARVFHLVN

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related5.1e-7350.91Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHSE
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV                                             I +I  A T  + KL   
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHSE

Query:  IKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEK
                   + ++ D+EN++E    KPA ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY        ++
Subjt:  IKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEK

Query:  GPENQLGESQQPPADPIIDQGPAKRMKF
            Q GESQ P  DPIIDQGPAKRMKF
Subjt:  GPENQLGESQQPPADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related2.0e-7753.5Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHS
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV   + N     T      A S +    + L  C   +    +  L++    Y L IF    + 
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHS

Query:  EIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE
        E     +YG   +   FD+EN++E    KPA ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY        +
Subjt:  EIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE

Query:  KGPENQLGESQQPPADPIIDQGPAKRMKF
        +    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  KGPENQLGESQQPPADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATT
TGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAA
CAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTT
TTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTT
GCTGCCCGAGTTTTCCATTTAGTAAATTATCATAGTGGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCAC
TGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCATTCTGAAATCAAATTT
TGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAG
CGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATA
GTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAA
CAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATT
TGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAA
CAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTT
TTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTT
GCTGCCCGAGTTTTCCATTTAGTAAATTATCATAGTGGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCAC
TGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCATTCTGAAATCAAATTT
TGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAG
CGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATA
GTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAA
CAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
Protein sequenceShow/hide protein sequence
MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFV
FRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHSEIKF
WVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQ
QPPADPIIDQGPAKRMKF