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ClCG07G014690 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG07G014690
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Genome locationCG_Chr07:31116298..31116636
RNA-Seq ExpressionClCG07G014690
SyntenyClCG07G014690
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70357.1 hypothetical protein VITISV_013713 [Vitis vinifera]7.1e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        LT
Subjt:  LT
RVW17530.1 Copia protein [Vitis vinifera]5.4e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++   TG+ SV IADG+ +K+ GI SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+ ELC GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        L+
Subjt:  LT
RVW64924.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]2.4e-2155.45Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+YNLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  L
        L
Subjt:  L
RVW87244.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]7.1e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        LT
Subjt:  LT
RVX20108.1 Copia protein [Vitis vinifera]5.4e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++   TG+ SV IADG+ +K+ GI SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+ ELC GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        L+
Subjt:  LT
TrEMBL top hitse value%identityAlignment
A0A438C2R4 Copia protein2.6e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++   TG+ SV IADG+ +K+ GI SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+ ELC GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        L+
Subjt:  LT
A0A438FYA4 Retrovirus-related Pol polyprotein from transposon RE21.2e-2155.45Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+YNLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  L
        L
Subjt:  L
A0A438HS01 Retrovirus-related Pol polyprotein from transposon RE23.4e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        LT
Subjt:  LT
A0A438KFY7 Copia protein2.6e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++   TG+ SV IADG+ +K+ GI SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+ ELC GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        L+
Subjt:  LT
A5BN47 Integrase catalytic domain-containing protein3.4e-2154.9Show/hide
Query:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL
        MTG+ +   ++    G+ SV IADG+ +K+ G  SI+++  + L+SVL VP L+ NLLS+SKL +DL C TKF  NSC+FQDL  GKMIG+AELC+GLYL
Subjt:  MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYL

Query:  LT
        LT
Subjt:  LT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGTAATAGATCTTCATTCTCATCTTTTTCTCTCCATACAGGCAACCTTTCTGTTCAAATTGCTGATGGTACACCTGCTAAAGTAACCGGGATCAAAAGTATTCA
AATTTCAAGCACAATAACTCTTGAATCAGTTTTGTTTGTGCCAAAATTGGAGTATAATTTGTTGTCTGTGAGCAAGTTGAATAAAGACTTGAATTGTGAAACCAAATTCC
TTATCAACTCTTGTATTTTTCAGGACTTGGGATTGGGAAAGATGATTGGCAATGCTGAATTATGTGCTGGATTGTATCTTCTCACAACAATGAGTCATCCATCAACAATG
GAGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGGTAATAGATCTTCATTCTCATCTTTTTCTCTCCATACAGGCAACCTTTCTGTTCAAATTGCTGATGGTACACCTGCTAAAGTAACCGGGATCAAAAGTATTCA
AATTTCAAGCACAATAACTCTTGAATCAGTTTTGTTTGTGCCAAAATTGGAGTATAATTTGTTGTCTGTGAGCAAGTTGAATAAAGACTTGAATTGTGAAACCAAATTCC
TTATCAACTCTTGTATTTTTCAGGACTTGGGATTGGGAAAGATGATTGGCAATGCTGAATTATGTGCTGGATTGTATCTTCTCACAACAATGAGTCATCCATCAACAATG
GAGCAGTAA
Protein sequenceShow/hide protein sequence
MTGNRSSFSSFSLHTGNLSVQIADGTPAKVTGIKSIQISSTITLESVLFVPKLEYNLLSVSKLNKDLNCETKFLINSCIFQDLGLGKMIGNAELCAGLYLLTTMSHPSTM
EQ