; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G000830 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G000830
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-binding protein 7-like isoform X1
Genome locationCG_Chr08:1775669..1782684
RNA-Seq ExpressionClCG08G000830
SyntenyClCG08G000830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459559.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo]1.3e-7760Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLH RTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS VS AITSS      S
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY
        RSQIV G SNEISQYSNRFS+SC+F TY ENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY

XP_022932504.1 RNA-binding protein 7 isoform X1 [Cucurbita moschata]3.8e-7455.44Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EEI NYAVKLFSGLV LHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSSNIS+KS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQIVPG SNEIS YSNR S SC+F+ Y ENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

XP_022973396.1 RNA-binding protein 7-like isoform X1 [Cucurbita maxima]1.7e-7455.78Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EEI NYAVKLFSGLV LHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSSNIS+KS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

XP_023523852.1 RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]1.0e-7455.78Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EEI NYAVKLFSGLV LHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSSNIS+KS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

XP_038890192.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida]3.0e-7962.24Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSS ISNKS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVD
        RSQI  G SNEISQYSNRFSTSC+FTTY ENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTL SL+QPKSRR DTSFPVD
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVD

TrEMBL top hitse value%identityAlignment
A0A1S3CAZ4 RNA-binding protein 7-like isoform X16.1e-7860Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLH RTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS VS AITSS      S
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY
        RSQIV G SNEISQYSNRFS+SC+F TY ENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY

A0A5A7T7S6 RNA-binding protein 7-like isoform X19.5e-7158.27Show/hide
Query:  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGG
        GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLH RTLKFA                             
Subjt:  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLGGG

Query:  GLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEI
                                                                        VSGQDKPS VS AITSS      SRSQIV G SNEI
Subjt:  GLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEI

Query:  SQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY
        SQY+NRFS+SC+F TY ENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Subjt:  SQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY

A0A6J1CKW6 RNA-binding protein 74.3e-7154.42Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+ CT+YVGNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYESEEIANYAVKLFSGLV LHNR LKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AI SSSNIS+K 
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQ VPG S+EISQYSNR STSC+F+ Y ENHLEA LYPGLVNQ NGYGSH+ NYN EYSQRY GTTL S +  + RR++TS PV YPPY+ LN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

A0A6J1EX61 RNA-binding protein 7 isoform X11.8e-7455.44Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EEI NYAVKLFSGLV LHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSSNIS+KS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQIVPG SNEIS YSNR S SC+F+ Y ENH+EA  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

A0A6J1I8J0 RNA-binding protein 7-like isoform X18.3e-7555.78Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL
        MSGRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EEI NYAVKLFSGLV LHNRTLKFA                 
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSL

Query:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS
                                                                                    VSGQDKPS  S AITSSSNIS+KS
Subjt:  SRFIIGLRLGGGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKS

Query:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN
        RSQIVPG SNEIS YSNR S SC+F+ Y ENHLEA  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Subjt:  RSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

SwissProt top hitse value%identityAlignment
O14102 Spliceosome-associated protein 494.8e-1143.28Show/hide
Query:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFS
        R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   YA ++ +
Subjt:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFS

Q09442 Splicing factor 3B subunit 41.9e-1239.74Show/hide
Query:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK
        R+   TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+YA+K+ + ++ L+ + +K
Subjt:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK

Q15427 Splicing factor 3B subunit 43.9e-1339.51Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK
        +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+YA+K+ + ++ L+ + ++
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK

Q6AYL5 Splicing factor 3B subunit 43.9e-1339.51Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK
        +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+YA+K+ + ++ L+ + ++
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK

Q8QZY9 Splicing factor 3B subunit 43.9e-1339.51Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK
        +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+YA+K+ + ++ L+ + ++
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK

Arabidopsis top hitse value%identityAlignment
AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-1235.9Show/hide
Query:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK
        R+   T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+YA+K+ + ++ LH + ++
Subjt:  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLK

AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.9e-0837.14Show/hide
Query:  SGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG
        SG   G  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S +    A+K   G
Subjt:  SGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG

AT4G10110.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-3582.14Show/hide
Query:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAV
        MSG S+ CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EEIA+YAVKLFSGLV+L+NRTLKFA+
Subjt:  MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAV

AT5G64200.1 ortholog of human splicing factor SC355.6e-0736.25Show/hide
Query:  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG-LVNLHNRTLKFA
        SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ AV+   G +V+    T++FA
Subjt:  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG-LVNLHNRTLKFA

AT5G64200.2 ortholog of human splicing factor SC355.6e-0736.25Show/hide
Query:  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG-LVNLHNRTLKFA
        SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ AV+   G +V+    T++FA
Subjt:  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSG-LVNLHNRTLKFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTT
GCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGA
ATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGCTGGTGGTGGTCTCAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGT
GGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGA
GCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTATCTGGGCAAGACAAGCCTT
CAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCAAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCC
ACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAA
AGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGA
ACTAA
mRNA sequenceShow/hide mRNA sequence
TTCGTATTTGAAAACATAAAAAGGGCTGTCCGTACGAAAATCCATTTTCAGAAAATTCCACTTCTCTCTCTCGTGAAACTTCCAGCCCTCAACCCCCTCCCGATCTGCTG
TTTTTCTCTTCTCCGGCCAGTATTTCCAAGAGCAGCTCACGCGATTAACCCTTCTGATCTGCTGTTTTTCTCTTCTCGCGGCGGAGGCGGCGGCGCCGTTTTACTAACCT
CCTTCTGATTTACCCCTTCCTGGCAATTGCCGAGCTACACTAGCCCTCTTCGTCGACGCTGCTCAAACAGAAGGCGGTCCTCACACCTTTCGTTTTCCAGCGGCGCTGCA
CCCTACAAAGTGACTCCTTTCCTGCAACCGACGCACGAGCACAACGCAGCCGACCTATCAAACCCACCCAATCGGACTCGAGCCAACAGCATTTTAAAACTCGGAGGTCA
GCTTTCGGCGGCTGCCCACGCTTCACTGGGCCGTGAAACGGACTACTCATAGGCTGTAGTGTTCGATTTTGTGAAATCGAACACAATCAAAACACTTTTCGACTCCTCTC
GGGGTTTTGCATCTGAACTTGCAGAACAATCATGTCAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACA
TTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAAC
TATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGCTGGTGGTGGTCTCAGGCTTGTTGCTTCCCTTGAAATCTCT
CTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAG
ATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGA
AAGAGAGACGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCAAGGTCGCAGATTGTTCCGGGTTGCTCTAA
TGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATG
GGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTT
CCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTCTGGTTAATCTAATCTTAATGGCAATATAAGTCTTAGGAAAAATTGGACCTCTT
AGATGGATGTAGAAGGTTTGGTGGAAAATGATACGATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAATCATTTTGTAGGTGTATGTGTTCATGTGATTT
GGCTGTGTTGTTGTAAAAATTATACTCGATACCTAACTAAGTATTGTAATCTATTTTATTAAATATTTAGATTTTCTTTAATTCATGTTTAATGTTATGGAATTATAAAT
GATAATTTCATGGTGACTGAAAGGAATAGCTTCTGGTTTGTGTATATTGAGTATTTACTTTTTTCTGAAGTGTTATACTTGAGCCAATATATAAATATTATTAACATTTT
GGTTTTAGTGAAGTGAAATCTAAATTACATGTAAATCCAGGTATTTTGGTTTGAGTTTATTGCCATTTCTGCGTTTTGGTATGCCTGTACTGAAATTCTTGGTAGGTTTT
AACTGTAAGGTATTGTCTAACTTTGCCCACTTAACTTTTTGAAAACATTTTAAAAGTAGATTACAAAGAAAATTCATAAATGTATGGCATGCTTGAAATTTTCAAGAAGT
AATTTCTTTTTTAAAAGAACTAATGATTGAAAATTTACTTCTTTGAGGGAGATGGTGCTTTCTAGTCCTGAGAGACATTCATATTCTTGTGAGATAGTAGATAAAACATT
TGTTGATCAGCATAGTGGCAGTTCTCTTTCAGAGGATCATTACAGGGGTTTCTATCAAAATTCAAGAATCTAGATACCTCATTTCTCTCATCTGGGCTCAAAGCAATTCT
ATTTGGAGTTTCCCATTAGTTTTACTATTCTTTGTATCATAAGAAGAATTTGTTCATTTTCTTTTATTTTACCTTTCGTATTGGTGTTGTAAAATATATACGTTTGTTTG
TGTATGCTAGATGATCTATCTTTGGCTGCCTTGTAAAGATTTGGGATAAGTTGATGTAGTCATAGTTTTAGTTACCAAGTAGTGTTTTTAAGTGAAAACCTTTTGTATAG
ACAATAAAATCACTCTGTTTATAATCCAGCTTTAATAGGACCTCCCGAAGCTTTTTGATTTTGTGCAATCACTGAGAATTTGAATTAAAGGAGGTTCTATAATGGTGATC
GGTATAAGCATAGTACATCATA
Protein sequenceShow/hide protein sequence
MSGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLLVVVSGLLLPLKSLSRFIIGLRLG
GGGLRLDGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFS
TSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN