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ClCG08G001045 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G001045
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
Genome locationCG_Chr08:2217508..2218397
RNA-Seq ExpressionClCG08G001045
SyntenyClCG08G001045
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4268383.1 unnamed protein product [Prunus armeniaca]9.2e-1445.95Show/hide
Query:  VGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPESFQFGNWLQCQGSQPRRRRTSPVREEKE-D
        +G  L IRV +D+TKPLRR + L      E + I  KYERLPDFCY CGRIGHVVKECK +     KE +   +G+WL  +    R R  SP ++E+E +
Subjt:  VGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPESFQFGNWLQCQGSQPRRRRTSPVREEKE-D

Query:  TISNFSPNAGD
        +  +F    GD
Subjt:  TISNFSPNAGD

TXG61726.1 hypothetical protein EZV62_013089 [Acer yangbiense]1.9e-1438.24Show/hide
Query:  EERGVKIRL--DSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD-LDVSSGKEPESFQFGNWLQCQGS
        E+ GV + L  DS    G+ LR++V IDI+KPL+R + L  G  ++ + + +KYERLPDFC+ CGRIGHVVKEC D L      +  + +FG WL+  G+
Subjt:  EERGVKIRL--DSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD-LDVSSGKEPESFQFGNWLQCQGS

Query:  QPRRRRTSPVREE---KEDTISNFSPNAGDSKEKEV
           + + S    E   + D + +  PN+ D   + +
Subjt:  QPRRRRTSPVREE---KEDTISNFSPNAGDSKEKEV

TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]5.8e-1645.26Show/hide
Query:  VKIRLDSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGK-EPESFQFGNWLQCQGSQ
        +++  DS    G+ +R++V IDI+KPL+R + L  G   E + + +KYERLPDFC+ CGRIGH++KEC D +   G  E    +FG WL+ QGS+
Subjt:  VKIRLDSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGK-EPESFQFGNWLQCQGSQ

XP_021713609.1 uncharacterized protein LOC110681792 [Chenopodium quinoa]1.4e-1439.71Show/hide
Query:  KKSTLSEEERGVKIRLDSNLDVG--EDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPES-FQFGN
        K+S     + G  I LD +  +G  E +RI+VL+DI KPLRRG+ L   D   + WI VKYERL DFC+ CGR+ H  KEC+  + + G EP   +Q+G 
Subjt:  KKSTLSEEERGVKIRLDSNLDVG--EDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPES-FQFGN

Query:  WLQCQGSQPRRRRTSPVREEKEDTISNFSPNAGDSK
        WL+    + + R     RE +   I     +AG  K
Subjt:  WLQCQGSQPRRRRTSPVREEKEDTISNFSPNAGDSK

XP_028102454.1 uncharacterized protein LOC114301689 [Camellia sinensis]1.1e-1447.42Show/hide
Query:  VGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKEC----KDLDVSSGKEPESFQFGNWLQCQGSQPRRRRTSPV
        VG  LRIRV I++ KPL RG+ L    ++E++W+  KYERLP+FCY CG +GH  KEC      L+  +GK   + Q+G WL+    +PR R TSPV
Subjt:  VGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKEC----KDLDVSSGKEPESFQFGNWLQCQGSQPRRRRTSPV

TrEMBL top hitse value%identityAlignment
A0A5C7HZB5 CCHC-type domain-containing protein9.0e-1538.24Show/hide
Query:  EERGVKIRL--DSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD-LDVSSGKEPESFQFGNWLQCQGS
        E+ GV + L  DS    G+ LR++V IDI+KPL+R + L  G  ++ + + +KYERLPDFC+ CGRIGHVVKEC D L      +  + +FG WL+  G+
Subjt:  EERGVKIRL--DSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD-LDVSSGKEPESFQFGNWLQCQGS

Query:  QPRRRRTSPVREE---KEDTISNFSPNAGDSKEKEV
           + + S    E   + D + +  PN+ D   + +
Subjt:  QPRRRRTSPVREE---KEDTISNFSPNAGDSKEKEV

A0A5C7IND1 CCHC-type domain-containing protein2.8e-1645.26Show/hide
Query:  VKIRLDSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGK-EPESFQFGNWLQCQGSQ
        +++  DS    G+ +R++V IDI+KPL+R + L  G   E + + +KYERLPDFC+ CGRIGH++KEC D +   G  E    +FG WL+ QGS+
Subjt:  VKIRLDSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGK-EPESFQFGNWLQCQGSQ

A0A803KXJ6 Uncharacterized protein6.9e-1539.71Show/hide
Query:  KKSTLSEEERGVKIRLDSNLDVG--EDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPES-FQFGN
        K+S     + G  I LD +  +G  E +RI+VL+DI KPLRRG+ L   D   + WI VKYERL DFC+ CGR+ H  KEC+  + + G EP   +Q+G 
Subjt:  KKSTLSEEERGVKIRLDSNLDVG--EDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPES-FQFGN

Query:  WLQCQGSQPRRRRTSPVREEKEDTISNFSPNAGDSK
        WL+    + + R     RE +   I     +AG  K
Subjt:  WLQCQGSQPRRRRTSPVREEKEDTISNFSPNAGDSK

A0A803LW54 Uncharacterized protein2.6e-1435.92Show/hide
Query:  EEFLDDWKKSTLSEEER----------GVKIRLDSN--LDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD
        +E + DW+K  L++EE           G  +  D +  L   + LRI+VL+D+ KPLRRG+ L  G ++   W+ VKYERL +FC+ CGR+ H  KEC+ 
Subjt:  EEFLDDWKKSTLSEEER----------GVKIRLDSN--LDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKD

Query:  LDVSSG-KEPESFQFGNWLQCQGSQPRRRRTSPVREEKEDTI
         + + G  +   +Q+G WL          R SP R+ + DT+
Subjt:  LDVSSG-KEPESFQFGNWLQCQGSQPRRRRTSPVREEKEDTI

A0A803MIW0 Uncharacterized protein5.3e-1534.59Show/hide
Query:  EEFLDDWKKSTLSEEE------RGVKIRLDSN-LDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDL-DVS
        ++ +++W+K  L+E+E      RG+    D N L   E +R+++L DI K LRRG+ +   +  E  WI  K ERL DFCY CGR+GH  ++C+ L D +
Subjt:  EEFLDDWKKSTLSEEE------RGVKIRLDSN-LDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDL-DVS

Query:  SGKEPESFQFGNWLQCQGSQPRRRRTSPVREEKEDTIS-NFSPNAGDSKEKEVDPVDSV
        +  E   +Q+G WL+ + S   + R S    EKE  +S N +     S+  E    D++
Subjt:  SGKEPESFQFGNWLQCQGSQPRRRRTSPVREEKEDTIS-NFSPNAGDSKEKEVDPVDSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGAGGAATTTCTTGATGACTGGAAGAAGTCAACTCTTTCTGAGGAAGAAAGAGGAGTTAAAATCAGACTTGACTCGAATTTAGATGTTGGAGAAGATCTAAG
AATTAGAGTTCTTATTGATATAACTAAACCACTAAGAAGAGGCATTTTACTGGATCCGGGGGATGATCAGGAAAACATTTGGATTCATGTGAAGTATGAACGCTTACCTG
ACTTCTGCTATAATTGTGGAAGAATTGGTCATGTGGTAAAGGAATGTAAAGATTTGGACGTTAGCAGTGGGAAAGAACCAGAAAGTTTTCAATTTGGAAATTGGCTTCAG
TGCCAAGGAAGTCAACCAAGAAGAAGGAGGACATCACCTGTAAGGGAGGAAAAGGAAGATACTATTTCAAATTTTTCTCCTAATGCAGGAGATTCTAAAGAGAAAGAGGT
GGATCCTGTTGATTCGGTTCTACCTCCTCAAGATAGCATCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAGAGGAATTTCTTGATGACTGGAAGAAGTCAACTCTTTCTGAGGAAGAAAGAGGAGTTAAAATCAGACTTGACTCGAATTTAGATGTTGGAGAAGATCTAAG
AATTAGAGTTCTTATTGATATAACTAAACCACTAAGAAGAGGCATTTTACTGGATCCGGGGGATGATCAGGAAAACATTTGGATTCATGTGAAGTATGAACGCTTACCTG
ACTTCTGCTATAATTGTGGAAGAATTGGTCATGTGGTAAAGGAATGTAAAGATTTGGACGTTAGCAGTGGGAAAGAACCAGAAAGTTTTCAATTTGGAAATTGGCTTCAG
TGCCAAGGAAGTCAACCAAGAAGAAGGAGGACATCACCTGTAAGGGAGGAAAAGGAAGATACTATTTCAAATTTTTCTCCTAATGCAGGAGATTCTAAAGAGAAAGAGGT
GGATCCTGTTGATTCGGTTCTACCTCCTCAAGATAGCATCAGATAG
Protein sequenceShow/hide protein sequence
MDSEEFLDDWKKSTLSEEERGVKIRLDSNLDVGEDLRIRVLIDITKPLRRGILLDPGDDQENIWIHVKYERLPDFCYNCGRIGHVVKECKDLDVSSGKEPESFQFGNWLQ
CQGSQPRRRRTSPVREEKEDTISNFSPNAGDSKEKEVDPVDSVLPPQDSIR