; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G001085 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G001085
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr08:2292062..2293012
RNA-Seq ExpressionClCG08G001085
SyntenyClCG08G001085
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]7.4e-2842.5Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+L  ++QV+P+LES V+ LK+QY+ IAEM+GP CS F WN +RKCI+ E  + + WVK H   + L  K FP++ DL IVF +DRATG    T  
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR
        E+GS++    E + ++ N     E+F +P+P     P+ ED+P+TP      +GS  PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-2741.88Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+   ++QV+ +LESRV+ LK+QY+AIA+M+GP CSRF WN +RKCI+ E  +FD WVK HP  + L  K F ++ DL IVF +D+ATG       
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR
        E+ S++    E + +  N     E+F +P+P     P+ ED+P+T       +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.5e-2843.12Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+L  ++QV+P+LES V+ LK+QY+ IAEM+GP CS F WN +RKCI+ E  + + WVK H   + L  K FP++ DL IVF +DRATG    T  
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR
        E+GS++    E + ++ N     E+F +P+P     P+ ED+P+TP      +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]8.1e-2741.88Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+   ++QV+ +LESRV+ LK+QY+AIA+M+GP CSRF WN +RKCI+ E  +FD WVK HP  + L  K F ++ DL IVF +D+ATG       
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR
        E+ S++    E + +  N     E+F +P+P     P+ ED+P+T       +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]8.1e-2744.83Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+ G ++QV+P+LE RV+ LK+QY+AI EM+GP CSRF WN KRKCI+ E  +FD  VK HP  + L  K FP++ DL IVF +DRATG    T  
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT
        E+ S +    E + +  N     E+F +P+P     P+ ED+ +T
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like3.9e-2741.88Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+   ++QV+ +LESRV+ LK+QY+AIA+M+GP CSRF WN +RKCI+ E  +FD WVK HP  + L  K F ++ DL IVF +D+ATG       
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR
        E+ S++    E + +  N     E+F +P+P     P+ ED+P+T       +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein3.6e-2842.5Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+L  ++QV+P+LES V+ LK+QY+ IAEM+GP CS F WN +RKCI+ E  + + WVK H   + L  K FP++ DL IVF +DRATG    T  
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR
        E+GS++    E + ++ N     E+F +P+P     P+ ED+P+TP      +GS  PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR

A0A5A7VKT2 Retrotransposon protein1.8e-2442.38Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        MM +K+ GC V+ +  ++ R++TLKR + AIAEM GP CS F WN + KCI  E E+FD WV+SHP  K L  K FP+Y++L  VF +DRATG    T A
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPGGRGS
        +VGS            N   G ++ F + D        +ED P   G  GS
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPGGRGS

A0A5D3BC95 Retrotransposon protein3.9e-2741.88Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+   ++QV+ +LESRV+ LK+QY+AIA+M+GP CSRF WN +RKCI+ E  +FD WVK HP  + L  K F ++ DL IVF +D+ATG       
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR
        E+ S++    E + +  N     E+F +P+P     P+ ED+P+T       +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTT--PGGRGSGSSMPSR

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein7.2e-2943.12Show/hide
Query:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA
        +M++K+L  ++QV+P+LES V+ LK+QY+ IAEM+GP CS F WN +RKCI+ E  + + WVK H   + L  K FP++ DL IVF +DRATG    T  
Subjt:  MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIA

Query:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR
        E+GS++    E + ++ N     E+F +P+P     P+ ED+P+TP      +GSS PS+
Subjt:  EVGSESIVKEENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPG--GRGSGSSMPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein5.5e-0533.96Show/hide
Query:  FDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGS
        F W+  R  I  +  ++D+++K HP  +  R KS P YNDL  +F+     G+
Subjt:  FDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGS

AT2G24960.2 unknown protein5.5e-0533.96Show/hide
Query:  FDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGS
        F W+  R  I  +  ++D+++K HP  +  R KS P YNDL  +F+     G+
Subjt:  FDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGS

AT4G02210.1 unknown protein2.6e-0726.04Show/hide
Query:  LESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEEN
        L++R +TL+  + ++  +L      F W+  R+ +  +  ++D ++K HP ++  R KS P Y DL +V+S   +      +I+E  S+++++E++
Subjt:  LESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEEN

AT4G02210.2 unknown protein2.6e-0726.04Show/hide
Query:  LESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEEN
        L++R +TL+  + ++  +L      F W+  R+ +  +  ++D ++K HP ++  R KS P Y DL +V+S   +      +I+E  S+++++E++
Subjt:  LESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEEN

AT5G27260.1 unknown protein3.7e-0925.87Show/hide
Query:  HLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEENEGI
        H  SR++ LK QY +  + L    S F W+   K      E++  ++K+HP  K+LRY +F F+++L I+F +  ATG +   + +  ++ +     E  
Subjt:  HLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKEENEGI

Query:  LNNQSGEFENFYVPDPPFASSPASEDIPTTPGGRGSGSSMPSR
              +F+N Y  D       +    P    G      +P R
Subjt:  LNNQSGEFENFYVPDPPFASSPASEDIPTTPGGRGSGSSMPSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAGCAGAAGGTTTTGGGGTGTTCCGTGCAGGTAAGCCCACATTTGGAGTCAAGGGTTAGGACGTTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCC
AGGATGTAGTAGGTTTGATTGGAATGCAAAGCGCAAATGTATTGACTATGAGGCGGAGATATTTGACGCATGGGTTAAGAGTCATCCGGGTACAAAAGAACTGCGCTATA
AGTCATTTCCTTTTTATAATGACTTGGCCATTGTATTCAGCAAAGACAGAGCCACAGGGAGTCATGTAACCACCATTGCAGAGGTCGGATCTGAATCTATTGTGAAAGAG
GAGAACGAGGGCATCTTGAATAACCAGTCCGGGGAATTCGAGAACTTTTATGTTCCTGATCCACCGTTCGCCAGCTCACCTGCATCAGAAGACATTCCAACTACACCTGG
CGGTAGAGGGTCTGGGAGTAGCATGCCATCAAGAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACGGCGAGGTGGTTCGAGAGGGCTTCTAACTTCTGA
mRNA sequenceShow/hide mRNA sequence
TAATGCTTGCTCACCACACTACACCTTCTTGTTCAAGCCTGATTGTGTTAACAAGTTTAATTTTAGATGGAAGCATTCGGATCATGTGCAAGAGCCGCAAAACATATTTG
GACGGATGAGGAGGACAGAATCCTCATGGAGTGTTTGGTCATGTGTGTGCAGTTTAGACACTGGTGAGCTAATAACGGGACTTTCCGACCTAGATTCCTATCAAACATAC
TACAGATGATGCAGCAGAAGGTTTTGGGGTGTTCCGTGCAGGTAAGCCCACATTTGGAGTCAAGGGTTAGGACGTTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTG
GGCCCAGGATGTAGTAGGTTTGATTGGAATGCAAAGCGCAAATGTATTGACTATGAGGCGGAGATATTTGACGCATGGGTTAAGAGTCATCCGGGTACAAAAGAACTGCG
CTATAAGTCATTTCCTTTTTATAATGACTTGGCCATTGTATTCAGCAAAGACAGAGCCACAGGGAGTCATGTAACCACCATTGCAGAGGTCGGATCTGAATCTATTGTGA
AAGAGGAGAACGAGGGCATCTTGAATAACCAGTCCGGGGAATTCGAGAACTTTTATGTTCCTGATCCACCGTTCGCCAGCTCACCTGCATCAGAAGACATTCCAACTACA
CCTGGCGGTAGAGGGTCTGGGAGTAGCATGCCATCAAGAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACGGCGAGGTGGTTCGAGAGGGCTTCTAACTTCTGACG
AAGTCCATTGACGGCATTGCACAGTGGCCTGTCGTGAACGAAGACCTAGCAAAGTGTTGTCGTCGAGAACTGTACGCTGAGCTCCAATCAATTCCTGG
Protein sequenceShow/hide protein sequence
MMQQKVLGCSVQVSPHLESRVRTLKRQYSAIAEMLGPGCSRFDWNAKRKCIDYEAEIFDAWVKSHPGTKELRYKSFPFYNDLAIVFSKDRATGSHVTTIAEVGSESIVKE
ENEGILNNQSGEFENFYVPDPPFASSPASEDIPTTPGGRGSGSSMPSRVGGPEVPRLESTARWFERASNF