; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G001090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G001090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial-like
Genome locationCG_Chr08:2294929..2297995
RNA-Seq ExpressionClCG08G001090
SyntenyClCG08G001090
Gene Ontology termsGO:0009853 - photorespiration (biological process)
GO:0015977 - carbon fixation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592356.1 hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sororia]3.9e-2877.89Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKL------SVGVGSRILQMLEHKDNGFCSFVNL
        KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRRAL+       +V VG RI +ML++ DNGF SFV L
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKL------SVGVGSRILQMLEHKDNGFCSFVNL
KAG7025171.1 SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-2095Show/hide
Query:  LSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA
        LSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRRA
Subjt:  LSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA
XP_022925400.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata]1.4e-2069.89Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSR----ILQMLEHKDNGFCSFVNL
        KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR + ++ G  S+     L+ L+     F SFV L
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSR----ILQMLEHKDNGFCSFVNL
XP_022973474.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima]2.1e-2172.83Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL
        KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRRA +  +    S +  L+ L+ +   F SFV L
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL
XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]9.4e-2295.38Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
        MAKLSGLQKQVLSLYRAFLRAARSKS EDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR  K
Subjt:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein1.2e-1987.69Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
        MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQIDRKNFI+IEYLLRR  K
Subjt:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial4.2e-2089.23Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
        MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQIDRKNFI+IEYLLRR  K
Subjt:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
A0A6A4MAN8 Uncharacterized protein (Fragment)1.2e-1964.84Show/hide
Query:  TMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEHKDNGFCSFVN
        T AKLSG+QKQVL LYR FLRAAR+KSPE+RRQIESIV+AEFRRN+K +DRKNFI+IEYLLRR     VGV        E +   F SF++
Subjt:  TMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEHKDNGFCSFVN
A0A6J1EHV2 succinate dehydrogenase assembly factor 1, mitochondrial-like6.5e-2169.89Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSR----ILQMLEHKDNGFCSFVNL
        KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR + ++ G  S+     L+ L+     F SFV L
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSR----ILQMLEHKDNGFCSFVNL
A0A6J1IEP3 succinate dehydrogenase assembly factor 1, mitochondrial-like1.0e-2172.83Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL
        KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRRA +  +    S +  L+ L+ +   F SFV L
Subjt:  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL
SwissProt top hitse value%identityAlignment
A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial1.4e-0442.55Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEH-KDNGFCSFVNLRG
        M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RR        G R LQML         +FV  RG
Subjt:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEH-KDNGFCSFVNLRG
B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial1.1e-0446.15Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQML
        M++LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RR        G R LQ+L
Subjt:  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQML
Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein2.5e-1768.75Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
        +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR   K
Subjt:  AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
AT2G39725.2 LYR family of Fe/S cluster biogenesis protein2.5e-1768.75Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK
        +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR   K
Subjt:  AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGA
TCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAAT
TATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGATAATGGATTTTGCTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTAGGCATC
CTAGATTCTCATGGAGTGGGCATCCAGATTACCATGTTTGTTTTGCGGTTACAATACCTTGACATTGGGAGATTCTCGAGCATCTCAAAAGTTCTGGAGATTCTCGGGCA
TCTCAAGAGTTTTGGATGCCCTCCTGAAATATGGGTTTTCAGATTTCTGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGA
TCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAAT
TATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGATAATGGATTTTGCTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTAGGCATC
CTAGATTCTCATGGAGTGGGCATCCAGATTACCATGTTTGTTTTGCGGTTACAATACCTTGACATTGGGAGATTCTCGAGCATCTCAAAAGTTCTGGAGATTCTCGGGCA
TCTCAAGAGTTTTGGATGCCCTCCTGAAATATGGGTTTTCAGATTTCTGAGTTGA
Protein sequenceShow/hide protein sequence
MVDREQYTMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEHKDNGFCSFVNLRGCLFCGHLGI
LDSHGVGIQITMFVLRLQYLDIGRFSSISKVLEILGHLKSFGCPPEIWVFRFLS