; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G002280 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G002280
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCell wall protein RBR3-like
Genome locationCG_Chr08:4836101..4840088
RNA-Seq ExpressionClCG08G002280
SyntenyClCG08G002280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035003.1 hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa]3.3e-4083.84Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        MGGNNRQKK+HSSFSIFS FKSRRGRKGD+C+HS S  +EMPRS KVWPSDEDK HHWVAEPGIDRKAKDYIDRIYRNRVFESERQT+T+  NGTK N+
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
KAG6592306.1 hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia]6.9e-3881.63Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPN
        MGGNNR KKAHSSFSIF+ FKS++ RK DHCDHS  W +EMPRS KVWPSDEDK H WVAEPGIDRKAKDYIDRIYRNRVFESERQTVT+P+NG K N
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPN
KAG6592308.1 hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia]5.3e-3883.33Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTK
        MGGNNR KKAHSSFSIF+ FKSRR RK DHCDHS  W +E+PRSSK+WPSDEDK H WVAEPGIDRKAKDYIDRIYRNRVFESERQTVT+P++GTK
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTK
KGN45869.1 hypothetical protein Csa_005516 [Cucumis sativus]1.9e-4084.85Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
KGN45870.1 hypothetical protein Csa_004960 [Cucumis sativus]5.6e-4082.47Show/hide
Query:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEPGIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Subjt:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
TrEMBL top hitse value%identityAlignment
A0A0A0K7Y2 Uncharacterized protein2.7e-4082.47Show/hide
Query:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEPGIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Subjt:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
A0A0A0K8W0 Uncharacterized protein2.7e-3271.72Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVAEPGIDRKAKDYIDRIY+NRVFE+ERQTVT+  NG   N+
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
A0A0A0KAK6 Uncharacterized protein9.4e-4184.85Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
A0A0A0KBW1 Uncharacterized protein1.4e-3983.51Show/hide
Query:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Subjt:  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
A0A5A7SWT9 Uncharacterized protein1.6e-4083.84Show/hide
Query:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
        MGGNNRQKK+HSSFSIFS FKSRRGRKGD+C+HS S  +EMPRS KVWPSDEDK HHWVAEPGIDRKAKDYIDRIYRNRVFESERQT+T+  NGTK N+
Subjt:  MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05858.1 unknown protein9.0e-1248.35Show/hide
Query:  MGGNNRQKKAHSS--FSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVT
        MGG NR   +HSS  FS+FS FK+RR  +    +   SW ++   + K   SDEDK  +WVAEPGIDRKA  +I + +  RV ESERQT++
Subjt:  MGGNNRQKKAHSS--FSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVT
AT5G26620.1 unknown protein4.6e-0847.69Show/hide
Query:  RKGDH--CDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV
        R+  H   +   SW +++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESERQT+
Subjt:  RKGDH--CDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGGTAATTCTTCAGTTATCTTTCCTCATCCGAAGTGTGCCCTATTTTGTCGCTCACTCTCTTCCAAATTGTTTGCCCCTCAATCCTCTTGGAGAGTGT
CTGGTTCTTCAAATGGTGAATACTCACATTGGTGTACATACATCTAGTCTGAAGATGGTACGCACTAAGCAGAAAGCTAATGAGAAACGCGATACAAGTGCTAGA
GTGGTTACTAAGAATCATCCGACTAATACAACAGCTAATGAGAACCTGCTACATGGCTCTAATCCTATTGAGACAATCGTTAGTCTGAGAATGTGTCTTGATCAC
TGTGTTCGTAATGTTTCTGCTGATTCTATTCTTGTCTCTATGTCTACCCCCCTAATTGATGAGAATCTACCTACTGAGTTTGAAATAGCTGGTTCTACTCTTGGA
GTGGTTGATAATATATACCCTGTTGTGCAACCGAATAGCTCACTTAATTCTGATGTTCCACAAAGATCTATCTCTAATGCTGGTACTAATGTTAATGTCATCATG
TTCGTTGTGCACTCTCCCACTAATAAGAAGCCCTCTATTCATAATGTTGACCCTGCTACTACTGAGGAAACGACTGCTCATGTATCCTCACCCGACTTTGACAGT
CCTCAGTCTACTTCCTCTTCTATTGCTTTTGAGGTTGTATCCTCTGCCTCCTTAGAGTCTATGGATGATGATGTCCCCATAGGTCAATTAAGAAATCCTTGGAGG
CGGTTGTCAAGATTGCAAGCTAAAGACAATGGTCCATCTAGTCGTCCTAGCTCACATCGTTCTAGTTCCTCCAATTCTAAACACATCTCCTTGTCCAATTATGAA
GATGATAATGATGTTGTCTCTACCCGACATCGTACCAAGGAAAAGCATAGAAAGATTCCTCCAAATGTCCCATCTGTTCCCATTGATGGAATTTCATTCCATAAT
GAAGAGAATGTTCAGAAGTGGAAATATGTTGTGCAACATCGCATCGCCGATGAAACGGTTTTGTCTAACCAGACTGTTTCATGCTTAGAAATCATAGATTCTAAA
TTCATTTTTCCATCTAATTTCTTCACCTACGCCATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGG
GGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTT
GCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTTCCAATGGA
ACAAAACCCAATATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGGTAATTCTTCAGTTATCTTTCCTCATCCGAAGTGTGCCCTATTTTGTCGCTCACTCTCTTCCAAATTGTTTGCCCCTCAATCCTCTTGGAGAGTGT
CTGGTTCTTCAAATGGTGAATACTCACATTGGTGTACATACATCTAGTCTGAAGATGGTACGCACTAAGCAGAAAGCTAATGAGAAACGCGATACAAGTGCTAGA
GTGGTTACTAAGAATCATCCGACTAATACAACAGCTAATGAGAACCTGCTACATGGCTCTAATCCTATTGAGACAATCGTTAGTCTGAGAATGTGTCTTGATCAC
TGTGTTCGTAATGTTTCTGCTGATTCTATTCTTGTCTCTATGTCTACCCCCCTAATTGATGAGAATCTACCTACTGAGTTTGAAATAGCTGGTTCTACTCTTGGA
GTGGTTGATAATATATACCCTGTTGTGCAACCGAATAGCTCACTTAATTCTGATGTTCCACAAAGATCTATCTCTAATGCTGGTACTAATGTTAATGTCATCATG
TTCGTTGTGCACTCTCCCACTAATAAGAAGCCCTCTATTCATAATGTTGACCCTGCTACTACTGAGGAAACGACTGCTCATGTATCCTCACCCGACTTTGACAGT
CCTCAGTCTACTTCCTCTTCTATTGCTTTTGAGGTTGTATCCTCTGCCTCCTTAGAGTCTATGGATGATGATGTCCCCATAGGTCAATTAAGAAATCCTTGGAGG
CGGTTGTCAAGATTGCAAGCTAAAGACAATGGTCCATCTAGTCGTCCTAGCTCACATCGTTCTAGTTCCTCCAATTCTAAACACATCTCCTTGTCCAATTATGAA
GATGATAATGATGTTGTCTCTACCCGACATCGTACCAAGGAAAAGCATAGAAAGATTCCTCCAAATGTCCCATCTGTTCCCATTGATGGAATTTCATTCCATAAT
GAAGAGAATGTTCAGAAGTGGAAATATGTTGTGCAACATCGCATCGCCGATGAAACGGTTTTGTCTAACCAGACTGTTTCATGCTTAGAAATCATAGATTCTAAA
TTCATTTTTCCATCTAATTTCTTCACCTACGCCATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGG
GGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTT
GCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTTCCAATGGA
ACAAAACCCAATATGTAA
Protein sequenceShow/hide protein sequence
MTKVILQLSFLIRSVPYFVAHSLPNCLPLNPLGECLVLQMVNTHIGVHTSSLKMVRTKQKANEKRDTSARVVTKNHPTNTTANENLLHGSNPIETIVSLRMCLDH
CVRNVSADSILVSMSTPLIDENLPTEFEIAGSTLGVVDNIYPVVQPNSSLNSDVPQRSISNAGTNVNVIMFVVHSPTNKKPSIHNVDPATTEETTAHVSSPDFDS
PQSTSSSIAFEVVSSASLESMDDDVPIGQLRNPWRRLSRLQAKDNGPSSRPSSHRSSSSNSKHISLSNYEDDNDVVSTRHRTKEKHRKIPPNVPSVPIDGISFHN
EENVQKWKYVVQHRIADETVLSNQTVSCLEIIDSKFIFPSNFFTYAMGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWV
AEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM