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ClCG08G002700 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G002700
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr08:5976188..5976892
RNA-Seq ExpressionClCG08G002700
SyntenyClCG08G002700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]2.5e-0827.46Show/hide
Query:  EKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIIS------C-----EDFFLCWE--VNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPL
        ++ WK LW ++VP   KIF WR C   LPT   LA+R II+      C      +  + WE  V +    G         L   ++V L    L  L P 
Subjt:  EKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIIS------C-----EDFFLCWE--VNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPL

Query:  DIRIFALIASTIWHRRHLVL-------------------------------ALPSAIVDNISHWYAPHLGTFKLNSDTALLD--GEVGIEAIVRDVITDV
        D+ +F + A  +W +R+ VL                                 P A V N+  W  P    FK+N D A+ +  G  G  A++R+ + +V
Subjt:  DIRIFALIASTIWHRRHLVL-------------------------------ALPSAIVDNISHWYAPHLGTFKLNSDTALLD--GEVGIEAIVRDVITDV

Query:  LLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSI
        + AL +    V S +  E +A   ++   ++AG + L IE +SI
Subjt:  LLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSI

XP_030930993.1 uncharacterized protein LOC115956857 [Quercus lobata]5.0e-0926.25Show/hide
Query:  FWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPL----
        FWK +W L +P   K+FLWRVC N+LPT + L +R I+    F  C           W   +       P + +    H  +  +     EL+S +    
Subjt:  FWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPL----

Query:  -DIRIFALIASTIW-HRRHLVLALPSAIVDNI--------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLA
          + +FA++A  IW HR  L L       D I                            W  P    FK N D A+    GE G+  + R+   +V+ A
Subjt:  -DIRIFALIASTIW-HRRHLVLALPSAIVDNI--------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLA

Query:  LESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNS
        L    ++ GS+E++E +A+  +++  +E GI+    E +S
Subjt:  LESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNS

XP_030946032.1 uncharacterized protein LOC115970553 [Quercus lobata]1.3e-0927.59Show/hide
Query:  FWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII------SC-----EDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPLDIRI
        FWK +W L +P   K+FLWRVC N+LPT + L +R I+      +C     + F+  W   +       P + +    H  ++ +     EL+S +  RI
Subjt:  FWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII------SC-----EDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPLDIRI

Query:  -----FALIASTIW-HRRHLVLALPSAIVDNI--------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLA
             FA++A  IW HR  L++       D I                            W  P    FK N D A+    GE GI  +VR+   +V+ A
Subjt:  -----FALIASTIW-HRRHLVLALPSAIVDNI--------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLA

Query:  LESHFVFVGSMELVEVIAMLTSISTTLEAGIS
        L    ++ GS+E++E +A   ++   +E GI+
Subjt:  LESHFVFVGSMELVEVIAMLTSISTTLEAGIS

XP_035545068.1 uncharacterized protein LOC118348173 [Juglans regia]2.5e-0825.21Show/hide
Query:  EKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII---SC-----EDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLS---PLDI
        +KFWK LW + VP   KIF W  C +SLPT   L +R +I   +C     E+  +   +   G       Y   +L     +SL   A++L        +
Subjt:  EKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII---SC-----EDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLS---PLDI

Query:  RIFALIASTIWHRRH-----LVLALPSAIVDNI-----SH----------------WYAPHLGTFKLNSDTALLDG--EVGIEAIVRDVITDVLLALESH
          F  +A  +W+RR+      +L   +++ +++     SH                W  P  G+ KLN D A   G  + G+ A++RD    +L+A    
Subjt:  RIFALIASTIWHRRH-----LVLALPSAIVDNI-----SH----------------WYAPHLGTFKLNSDTALLDG--EVGIEAIVRDVITDVLLALESH

Query:  FVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII
         + +   E +E++A+   +   +  G+S L +E++S++
Subjt:  FVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII

XP_038897425.1 uncharacterized protein LOC120085494 [Benincasa hispida]1.4e-1136.36Show/hide
Query:  ALELLSPLDIRIFALIASTIWHRR--------------------HLVLAL---PSAIVDNIS----------HWYAPHLGTFKLNSDTALLDGEVGIEAI
        A E+L  LD+ IF+LIA  IWH                      +LV ++   P  + D  S          HW  P   +FK+NSDTA LDG+V ++AI
Subjt:  ALELLSPLDIRIFALIASTIWHRR--------------------HLVLAL---PSAIVDNIS----------HWYAPHLGTFKLNSDTALLDGEVGIEAI

Query:  VRDVITDVLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSIIF
        V D   DV+L +ESHF  +GS++L E IAM   +S  L++GI    ++ N   F
Subjt:  VRDVITDVLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSIIF

TrEMBL top hitse value%identityAlignment
A0A2N9F2A9 RNase H domain-containing protein1.3e-1026.52Show/hide
Query:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII--------------------SCEDFFLCWE-VNRSGTFGRSPNYCFFDLHHSNVVSLAC
        M + WK +W+L+VP   + FLWR C NSLPT   L  R I+                     C+     W+ ++     G S    F DL H        
Subjt:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII--------------------SCEDFFLCWE-VNRSGTFGRSPNYCFFDLHHSNVVSLAC

Query:  KALELLSPLDIRIFALIASTIWHRRHLV---------LALPSAIVDNISHWYAPHLGTFKLNSDTALLD--GEVGIEAIVRDVITDVLLALESHFVFVGS
        +   +LSP ++++F++I+ +IW+RR+ +           +P ++   +  W  P  G++K+N D A+       GI  IVR+   +V+ +L     F  S
Subjt:  KALELLSPLDIRIFALIASTIWHRRHLV---------LALPSAIVDNISHWYAPHLGTFKLNSDTALLD--GEVGIEAIVRDVITDVLLALESHFVFVGS

Query:  MELVEVIAMLTSISTTLEAGISPLYIETNS
        +E +E  A  ++I    + G +   +E +S
Subjt:  MELVEVIAMLTSISTTLEAGISPLYIETNS

A0A2N9FQ02 Reverse transcriptase domain-containing protein1.4e-0926.34Show/hide
Query:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGT-FGRSPNY-CFFDLHHSNVVSLACKALELLSP
        ME+ WK +W+L VP+  ++F+WR   +SLP+   L +++++      LC           W      T +G+      F   +  N   L C+   L  P
Subjt:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGT-FGRSPNY-CFFDLHHSNVVSLACKALELLSP

Query:  LDIRIFALIASTIWHRRHLV----------------------------LALPSAIVDNISHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLL
        +D+ +F+     IWHRR+ V                            L LPS+     +HW  P   ++K+N D A+     E GI  IVR+     + 
Subjt:  LDIRIFALIASTIWHRRHLV----------------------------LALPSAIVDNISHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLL

Query:  ALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII
         L     F  S+E  E +A+  +I   LE G++ +  E +S I
Subjt:  ALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII

A0A2N9GZI9 Reverse transcriptase domain-containing protein1.2e-0827.27Show/hide
Query:  WKLLWALSVPQITKIFLWRVCLNSLPTCQALAQR--------------------SIISCEDFFLCWEVNRSGTFGRSPNYC-FFDLHHSNVVSLACKALE
        WK +W+L VP   + FLWR C +SLPT + L  R                    +++ C++    W+    G      ++  F +L+H N+ +L  + L 
Subjt:  WKLLWALSVPQITKIFLWRVCLNSLPTCQALAQR--------------------SIISCEDFFLCWEVNRSGTFGRSPNYC-FFDLHHSNVVSLACKALE

Query:  LLSPLDIRIFALIASTIWHRR--HLVLALPSAIVDNISHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLALESHFVFVGSMELVEVIAMLT
        L        F ++  +I   R  H   A P      +  W  P  G +K+N D A      E GI AIVR+   +V+ AL     +  S+E VE  A   
Subjt:  LLSPLDIRIFALIASTIWHRR--HLVLALPSAIVDNISHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVLLALESHFVFVGSMELVEVIAMLT

Query:  SISTTLEAGISPLYIETNSI
        +++  L+ G+  + IE +S+
Subjt:  SISTTLEAGISPLYIETNSI

A0A2N9H1N4 RNase H domain-containing protein9.8e-1125.82Show/hide
Query:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNY--CFFDLHHSNVVSLACKALELLSP
        M + WK +W+L+VP  T+ FLWR C NSLPT   L  R I+      +C           W+  +  +  +S ++     +  +++ + L  K   LLS 
Subjt:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNY--CFFDLHHSNVVSLACKALELLSP

Query:  LDIRIFALIASTIWHRRHLV---------LALPSAIVDNISH----------------------WYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITD
         ++++F++I  +IW+RR+ +         L L     D++S                       W  P  G +K+N D A+       GI  I+R+   +
Subjt:  LDIRIFALIASTIWHRRHLV---------LALPSAIVDNISH----------------------WYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITD

Query:  VLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNS
        V+ +L   F F  S+E VE  A  ++I    + G + + +E +S
Subjt:  VLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNS

A0A2N9IXD3 Uncharacterized protein4.1e-0926.23Show/hide
Query:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNYCFFDLHHS---NVVSLACKALELLS
        ME+ WK +W+L VP+  ++F+WR   +SLP+   L +R ++      +C           W+  ++    R       D+  S   N   L C   EL  
Subjt:  MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLC-----------WEVNRSGTFGRSPNYCFFDLHHS---NVVSLACKALELLS

Query:  PLDIRIFALIASTIWHRRHLV-LALPSAIVDNI---------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVL
        P D+ +F+ I   IWHRR+ V L  P    D+I                           + W  P    FK+N D A+     E GI  +VR+   + +
Subjt:  PLDIRIFALIASTIWHRRHLV-LALPSAIVDNI---------------------------SHWYAPHLGTFKLNSDTALL--DGEVGIEAIVRDVITDVL

Query:  LALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII
          L     F  S+E  E +A   ++   LE G++ +  E +S I
Subjt:  LALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGTTTTGGAAATTGTTGTGGGCCCTCTCTGTCCCACAAATAACTAAGATTTTCCTTTGGCGTGTGTGCCTTAACTCTCTTCCAACATGTCAAGCTTTGGCTCA
ACGATCAATTATCAGTTGCGAGGATTTCTTTTTATGCTGGGAAGTAAACAGATCTGGAACCTTTGGTCGATCTCCTAATTATTGTTTTTTCGACTTGCACCACTCTAATG
TTGTTTCTCTCGCTTGCAAGGCCTTGGAGCTTTTAAGCCCTCTTGATATCAGAATATTTGCGCTTATTGCTTCTACTATTTGGCACAGACGCCACCTAGTGCTGGCTCTC
CCTTCCGCAATTGTTGACAACATCTCCCATTGGTATGCCCCTCATCTTGGCACGTTTAAGTTAAATTCTGACACTGCTTTACTTGATGGAGAAGTGGGTATCGAAGCAAT
TGTTCGTGACGTGATTACTGATGTGTTGCTTGCTTTGGAAAGCCATTTTGTTTTTGTTGGATCCATGGAACTCGTTGAGGTCATTGCCATGCTTACTAGTATTTCTACGA
CCCTTGAGGCTGGCATTTCTCCGCTCTACATCGAAACTAATTCCATAATTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGTTTTGGAAATTGTTGTGGGCCCTCTCTGTCCCACAAATAACTAAGATTTTCCTTTGGCGTGTGTGCCTTAACTCTCTTCCAACATGTCAAGCTTTGGCTCA
ACGATCAATTATCAGTTGCGAGGATTTCTTTTTATGCTGGGAAGTAAACAGATCTGGAACCTTTGGTCGATCTCCTAATTATTGTTTTTTCGACTTGCACCACTCTAATG
TTGTTTCTCTCGCTTGCAAGGCCTTGGAGCTTTTAAGCCCTCTTGATATCAGAATATTTGCGCTTATTGCTTCTACTATTTGGCACAGACGCCACCTAGTGCTGGCTCTC
CCTTCCGCAATTGTTGACAACATCTCCCATTGGTATGCCCCTCATCTTGGCACGTTTAAGTTAAATTCTGACACTGCTTTACTTGATGGAGAAGTGGGTATCGAAGCAAT
TGTTCGTGACGTGATTACTGATGTGTTGCTTGCTTTGGAAAGCCATTTTGTTTTTGTTGGATCCATGGAACTCGTTGAGGTCATTGCCATGCTTACTAGTATTTCTACGA
CCCTTGAGGCTGGCATTTCTCCGCTCTACATCGAAACTAATTCCATAATTTTTTGA
Protein sequenceShow/hide protein sequence
MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPLDIRIFALIASTIWHRRHLVLAL
PSAIVDNISHWYAPHLGTFKLNSDTALLDGEVGIEAIVRDVITDVLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSIIF