; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G002830 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G002830
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPolyadenylate-binding protein 1-B-binding protein
Genome locationCG_Chr08:6670594..6671621
RNA-Seq ExpressionClCG08G002830
SyntenyClCG08G002830
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9584761.1 hypothetical protein Lalb_Chr25g0281621 [Lupinus albus]1.5e-2345.56Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY
        M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY

Query:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL
          FL I S+ STS V Y +ACIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Subjt:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL

KAF1866066.1 hypothetical protein Lal_00013503 [Lupinus albus]1.5e-2345.56Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY
        M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY

Query:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL
          FL I S+ STS V Y +ACIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Subjt:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL

XP_021605622.1 uncharacterized protein LOC110610059 [Manihot esculenta]3.0e-2446.74Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVM
        M+ +  +MQFLGIFGI +E+YKII+TWRKIFSQITL LI PLS  FLA+  IS  +  N+    FQ++QT+   G  R+ K++DL +S E  YF LF + 
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVM

Query:  IYNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTV
         +  FL I S+ ST+ V Y VACIYT  D V+F   + +V KVW+R+MIT        F Y+ VA  +    I ++S D  F V
Subjt:  IYNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTV

XP_022153679.1 uncharacterized protein LOC111021136 [Momordica charantia]2.4e-4565.06Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN
        M++KL KMQFLG FGILQEA+KII+TWRKIFSQITL  IFPLSLFFLAY HI  HMI+N  FQI  TK QK  P+F+ +SDLV+SY+ AY  LF V  Y+
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN

Query:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL
         FL+++SIPST+ V Y VA IYT + + SFK SLK V KVW+RV++TSFYTL F+ TY SVA  VL
Subjt:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL

XP_038885958.1 uncharacterized protein LOC120076261 [Benincasa hispida]1.3e-6754.46Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN
        MEVKL KMQFLGIFGILQEAYKIIYTWRKIFSQITL LIFPLSLFFLAY HIS HM Q + FQI QTK QKG PRFV +SDLV+SYELAYF LFI+ +Y+
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN

Query:  IFLTIISIPSTSVVTYVVACIYTDD-DKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDF--------------------
        IFLTIISIPSTSVVT+VVACIYTDD +KVSF  SLK+VTKVW+RVMITSFY+LGF+FTYDSVA CVL L+ RVI     F                    
Subjt:  IFLTIISIPSTSVVTYVVACIYTDD-DKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDF--------------------

Query:  ---TVVW----IQSINEKP---KAIERED--------GGRNLLYKTVVVRGVVLGMISK-----------------------------------------
           + +W    I S+ E+    KA+ +              L++  VVV G +LGMISK                                         
Subjt:  ---TVVW----IQSINEKP---KAIERED--------GGRNLLYKTVVVRGVVLGMISK-----------------------------------------

Query:  --SLAEVYVSIKANDVWVDTERLLV
          SL E+YVS+KANDV V+TE LLV
Subjt:  --SLAEVYVSIKANDVWVDTERLLV

TrEMBL top hitse value%identityAlignment
A0A2C9WH67 Uncharacterized protein1.5e-2446.74Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVM
        M+ +  +MQFLGIFGI +E+YKII+TWRKIFSQITL LI PLS  FLA+  IS  +  N+    FQ++QT+   G  R+ K++DL +S E  YF LF + 
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVM

Query:  IYNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTV
         +  FL I S+ ST+ V Y VACIYT  D V+F   + +V KVW+R+MIT        F Y+ VA  +    I ++S D  F V
Subjt:  IYNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTV

A0A6A4N751 Uncharacterized protein7.3e-2445.56Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY
        M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY

Query:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL
          FL I S+ STS V Y +ACIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Subjt:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL

A0A6A5LX26 Uncharacterized protein7.3e-2445.56Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY
        M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY

Query:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL
          FL I S+ STS V Y +ACIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Subjt:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL

A0A6J1DJT8 uncharacterized protein LOC1110211361.2e-4565.06Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN
        M++KL KMQFLG FGILQEA+KII+TWRKIFSQITL  IFPLSLFFLAY HI  HMI+N  FQI  TK QK  P+F+ +SDLV+SY+ AY  LF V  Y+
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN

Query:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL
         FL+++SIPST+ V Y VA IYT + + SFK SLK V KVW+RV++TSFYTL F+ TY SVA  VL
Subjt:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL

M5VKD3 Uncharacterized protein6.2e-2343.75Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHIS-YHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY
        M+ +  ++QFLGIFGI +EAYKI+++WRKIFSQITL LI PLS  FLA+  +S   +++ +H +    +     PR+ ++SD V+S E A F LF   +Y
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHIS-YHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIY

Query:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISL
          FL I S+ STS V Y +ACIYT  + ++++  + +V KVW+RVM+T F T    F Y+ VA  VL + +  ++L
Subjt:  NIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31130.1 unknown protein2.8e-0430.9Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKIS--DLVVSYELAYFCLFIVMI
        M+++  ++QFL I  +LQE+  I     + F  ITL  IFPLS   LA+         +L  Q    K  K  P     S  D  V        L     
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKIS--DLVVSYELAYFCLFIVMI

Query:  YNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLD
        Y IFL   S+ ST+ V + VA +YT    VSF  +L  + KV++R+ IT  +     F Y++V    L +++  + L+
Subjt:  YNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLD

AT4G19950.1 unknown protein1.3e-0428.04Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL--HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMI
        M++   ++QFL   GIL+E+  I     K F  ITL LIFPLS   LA++  +  ++  +  + Q +Q++ Q  +   +          +  FC      
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL--HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMI

Query:  YNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSI
        Y IFL   S+ ST+ V + VA +YT    VSF  ++  +  V +R+ IT  +       Y++V +  L  +I  +++D+   V+ + S+
Subjt:  YNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSI

AT5G44860.1 unknown protein1.5e-0529.95Show/hide
Query:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN
        M++   ++QFL I GIL+E+  I     K F  ITL LIFPLS   LA++  +    Q +  Q++ T            SD   +       L    IY 
Subjt:  MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYN

Query:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSI
        IFL   S+ ST+ V + VA +YT    VSF  ++  +  V +R+ IT  +       Y+S  V +L L++ ++++D+   ++ + S+
Subjt:  IFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACAAGAAATGGAAGTAAAACTTGGAAAGATGCAATTTCTTGGGATCTTTGGAATTCTCCAAGAAGCCTACAAGATCATCTACACATGGAGGAAAATATTT
TCCCAAATCACTCTATTATTAATCTTCCCTCTATCTCTCTTCTTCTTGGCTTACACCCACATTTCCTACCATATGATTCAAAATCTTCACTTCCAAATAAATCAA
ACCAAATTCCAGAAAGGTTTTCCAAGATTTGTCAAGATTTCCGACCTTGTCGTGTCGTACGAATTGGCCTATTTTTGCCTCTTCATCGTCATGATCTACAATATC
TTTCTCACCATCATTTCTATCCCTTCTACCTCCGTCGTAACCTATGTCGTCGCATGTATATACACCGACGACGACAAAGTTTCTTTCAAGCACAGCTTGAAAATT
GTCACCAAGGTTTGGAGACGAGTAATGATCACATCTTTTTATACCTTAGGATTCACTTTCACTTACGACTCGGTGGCGGTTTGTGTTCTTCCTTTGATGATTCGA
GTGATCTCTTTAGATATGGATTTTACTGTCGTATGGATTCAAAGCATTAATGAAAAGCCAAAGGCTATTGAGAGGGAAGATGGTGGTCGCAACTTATTATACAAG
ACGGTGGTTGTTCGTGGGGTTGTGTTGGGGATGATAAGTAAGAGTCTCGCCGAAGTTTATGTGTCAATAAAGGCAAATGATGTTTGGGTCGACACCGAGAGGCTA
CTAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACAAGAAATGGAAGTAAAACTTGGAAAGATGCAATTTCTTGGGATCTTTGGAATTCTCCAAGAAGCCTACAAGATCATCTACACATGGAGGAAAATATTT
TCCCAAATCACTCTATTATTAATCTTCCCTCTATCTCTCTTCTTCTTGGCTTACACCCACATTTCCTACCATATGATTCAAAATCTTCACTTCCAAATAAATCAA
ACCAAATTCCAGAAAGGTTTTCCAAGATTTGTCAAGATTTCCGACCTTGTCGTGTCGTACGAATTGGCCTATTTTTGCCTCTTCATCGTCATGATCTACAATATC
TTTCTCACCATCATTTCTATCCCTTCTACCTCCGTCGTAACCTATGTCGTCGCATGTATATACACCGACGACGACAAAGTTTCTTTCAAGCACAGCTTGAAAATT
GTCACCAAGGTTTGGAGACGAGTAATGATCACATCTTTTTATACCTTAGGATTCACTTTCACTTACGACTCGGTGGCGGTTTGTGTTCTTCCTTTGATGATTCGA
GTGATCTCTTTAGATATGGATTTTACTGTCGTATGGATTCAAAGCATTAATGAAAAGCCAAAGGCTATTGAGAGGGAAGATGGTGGTCGCAACTTATTATACAAG
ACGGTGGTTGTTCGTGGGGTTGTGTTGGGGATGATAAGTAAGAGTCTCGCCGAAGTTTATGTGTCAATAAAGGCAAATGATGTTTGGGTCGACACCGAGAGGCTA
CTAGTGTGA
Protein sequenceShow/hide protein sequence
MQQEMEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNI
FLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSINEKPKAIEREDGGRNLLYK
TVVVRGVVLGMISKSLAEVYVSIKANDVWVDTERLLV