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ClCG08G003710 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G003710
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr08:10261652..10263120
RNA-Seq ExpressionClCG08G003710
SyntenyClCG08G003710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]3.0e-1072.34Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL
        MARR+KM KHIW+KVEDA+LV++L+ LVETGW+AD  TFK G LQQL
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]3.9e-1066.04Show/hide
Query:  LAATRLMARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL
        LA   +MA   K  KH+WSKVEDAKLV+AL++LVETGWR DNGTF+ G LQ L
Subjt:  LAATRLMARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]2.0e-0968.09Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL
        MA   K  KH+WSKVEDAKL++AL++LVETGWR+DNGTF+ G LQ L
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL

XP_038896734.1 uncharacterized protein At2g29880-like [Benincasa hispida]3.0e-1070.21Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL
        MA R+KM KHIW+KVEDA+LV++L+H+VET W+ADNGTFK G LQ+L
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.1e-0970.21Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL
        M    K  KHIWSKVEDAKLV+AL++LVETGWR+DNGTF+ G LQ L
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL

TrEMBL top hitse value%identityAlignment
A0A5D3BZU3 Retrotransposon protein2.0e-0454.17Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVET-GWRADNGTFKSGSLQQL
        MA   +  KH W+K E+AKLV+ L+ LV   GWR+DNGTF+ G L QL
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVET-GWRADNGTFKSGSLQQL

A0A5D3C1M0 Retrotransposon protein2.7e-0452.08Show/hide
Query:  MARRDKMKKHIWSKVEDAKLVKALMHLVET-GWRADNGTFKSGSLQQL
        MA   ++ KH W+K E+A LV+ L+ LV   GWR+DNGTF+ G L QL
Subjt:  MARRDKMKKHIWSKVEDAKLVKALMHLVET-GWRADNGTFKSGSLQQL

A0A6V7PAW0 Myb_DNA-bind_3 domain-containing protein9.1e-0557.78Show/hide
Query:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL
        R+K  KH W+K ED KL++ L+ L  +G W+ADNGTF+SG LQQL
Subjt:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL

A0A6V7PLJ8 Myb_DNA-bind_3 domain-containing protein2.0e-0455.56Show/hide
Query:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL
        R+K  KH W+K ED KL++ L+ L  +G W+ADNGTF++G LQQL
Subjt:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL

A0A6V7QJW8 Uncharacterized protein2.0e-0455.56Show/hide
Query:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL
        R+K  KH W+K ED KL++ L+ L  +G W+ADNGTF++G LQQL
Subjt:  RDKMKKHIWSKVEDAKLVKALMHLVETG-WRADNGTFKSGSLQQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCGAACATCTGGTCGTCTAGCAGCTACTCGCTTAATGGCACGGCGTGATAAGATGAAGAAACACATTTGGTCCAAAGTCGAAGATGCAAAGTTGGTCAAGGCGTT
AATGCATTTGGTTGAGACTGGTTGGCGGGCTGATAATGGGACTTTCAAATCTGGCTCTCTACAACAACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCGAACATCTGGTCGTCTAGCAGCTACTCGCTTAATGGCACGGCGTGATAAGATGAAGAAACACATTTGGTCCAAAGTCGAAGATGCAAAGTTGGTCAAGGCGTT
AATGCATTTGGTTGAGACTGGTTGGCGGGCTGATAATGGGACTTTCAAATCTGGCTCTCTACAACAACTTTAA
Protein sequenceShow/hide protein sequence
MIRTSGRLAATRLMARRDKMKKHIWSKVEDAKLVKALMHLVETGWRADNGTFKSGSLQQL