CuGenDBv2

Gene ID	ClCG08G003810
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase domain-containing protein
Genome location	CG_Chr08:10503299..10515742
RNA-Seq Expression	ClCG08G003810
Synteny	ClCG08G003810
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

3.8e-16

30.77

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A+ LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S+       V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP
            L  G+  GR G  V ++       EG +G R                        W+AW+E YIL+G  +            ++ ++  C      
Subjt:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP

Query:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
         WL    S+EL++L    Q + P +   D  +WV    G FS  + W
Subjt:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

1.7e-16

31.3

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A++LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S     +  V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FELSYGEVVGREG--WYVD-------YLEGRYGSRWMAWLEEYILRG----------------GVVMFGLI---CGYFVV------------------PF
           SY   + R+G  W +         +    GS W+AW+E YIL+G                  ++ G I    G  V+                    
Subjt:  FELSYGEVVGREG--WYVD-------YLEGRYGSRWMAWLEEYILRG----------------GVVMFGLI---CGYFVV------------------PF

Query:  WL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
        WL     +EL+ L    Q + P +   D W+WVP   G FS  + W
Subjt:  WL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

3.8e-16

30.77

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A+ LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S+       V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP
            L  G+  GR G  V ++       EG +G R                        W+AW+E YIL+G  +            ++ ++  C      
Subjt:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP

Query:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
         WL    S+EL++L    Q + P +   D  +WV    G FS  + W
Subjt:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]

8.5e-16

32.08

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV    A+ LA  MGF LG+LPV YLGLPLLTGRL+++DC P      S        V     +  +          +W ++FVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP
            L  G+  GR G+ V ++E            + G  W       + + G  +F               GL  G +  P  +SMEL++L    Q + P
Subjt:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP

Query:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI
         +   D+W+W+P   G FS  + W      GG  R AS++
Subjt:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI

XP_038887237.1 uncharacterized protein LOC120077424 [Benincasa hispida]

1.1e-20

33.62

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        MFVAGV+  EA +L  +MG +LGSLPV YL LPLL  RL+A DC P           L+  +     S+AV S            + V  A  + EV   
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FELSYGEVVGREGWYVDYLEGRYGSRWMAWLEEYILRGGVVMFGLICGYFVVPFWLSMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRWLHGG
                     W  ++++G  G RW                            +S EL+E+ G  Q + PRV  ED W+WVP       E NR LHGG
Subjt:  FELSYGEVVGREGWYVDYLEGRYGSRWMAWLEEYILRGGVVMFGLICGYFVVPFWLSMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRWLHGG

Query:  SPRDASMILHLIISTIHARVASWPNDVSG
         PR    ++HL++ST+ AR  SW  D+ G
Subjt:  SPRDASMILHLIISTIHARVASWPNDVSG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E258 uncharacterized protein LOC103496880

4.1e-16

32.08

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV    A+ LA  MGF LG+LPV YLGLPLLTGRL+++DC P      S        V     +  +          +W ++FVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP
            L  G+  GR G+ V ++E            + G  W       + + G  +F               GL  G +  P  +SMEL++L    Q + P
Subjt:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP

Query:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI
         +   D+W+W+P   G FS  + W      GG  R AS++
Subjt:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.8e-16

30.77

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A+ LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S+       V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP
            L  G+  GR G  V ++       EG +G R                        W+AW+E YIL+G  +            ++ ++  C      
Subjt:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP

Query:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
         WL    S+EL++L    Q + P +   D  +WV    G FS  + W
Subjt:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

A0A5A7V4C1 Reverse transcriptase domain-containing protein

4.1e-16

32.08

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV    A+ LA  MGF LG+LPV YLGLPLLTGRL+++DC P      S        V     +  +          +W ++FVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP
            L  G+  GR G+ V ++E            + G  W       + + G  +F               GL  G +  P  +SMEL++L    Q + P
Subjt:  FE--LSYGEVVGREGWYVDYLEG-----------RYGSRWMAWLEEYILRGGVVMF---------------GLICGYFVVPFWLSMELVELSGLAQGIQP

Query:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI
         +   D+W+W+P   G FS  + W      GG  R AS++
Subjt:  RVGFEDKWLWVPSASGKFSERNRW----LHGGSPRDASMI

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein

8.3e-17

31.3

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A++LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S     +  V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FELSYGEVVGREG--WYVD-------YLEGRYGSRWMAWLEEYILRG----------------GVVMFGLI---CGYFVV------------------PF
           SY   + R+G  W +         +    GS W+AW+E YIL+G                  ++ G I    G  V+                    
Subjt:  FELSYGEVVGREG--WYVD-------YLEGRYGSRWMAWLEEYILRG----------------GVVMFGLI---CGYFVV------------------PF

Query:  WL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
        WL     +EL+ L    Q + P +   D W+WVP   G FS  + W
Subjt:  WL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.8e-16

30.77

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Query:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF
        +FVAGV+   A+ LA  MGF  G+LPV YLGLPLLTGRL+++DC P      S+       V        +          +W +VFVLPA V  EVD+ 
Subjt:  MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRF

Query:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP
            L  G+  GR G  V ++       EG +G R                        W+AW+E YIL+G  +            ++ ++  C      
Subjt:  FE--LSYGEVVGREGWYVDYL-------EGRYGSR------------------------WMAWLEEYILRGGVV------------MFGLI--CGYFVVP

Query:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW
         WL    S+EL++L    Q + P +   D  +WV    G FS  + W
Subjt:  FWL----SMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.5e-05

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Query:  VAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFA----VYSVGFTKFSSFWFNVFVLPASVTQEVD
        +AGV  ++  ++     F  G+LPV YLGLPLLT ++  SD  P       +    +G+      SFA    + S      ++FW + F LP++  +E+D
Subjt:  VAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFA----VYSVGFTKFSSFWFNVFVLPASVTQEVD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTTGTGGCTGGTGTGGATGTTAGTGAGGCTAATGAGCTGGCCCAGTTTATGGGGTTCACTTTAGGCTCTCTTCCTGTTCATTATCTGGGCCTTCCTTTGCTTACTGG
GAGATTGAAAGCGTCAGATTGTATCCCCCCTGATTCAGATGATTATAGCGAGAGTGAGGAGTTGGTCGGTGAGGTTGCTTTCCTTTGTTGGTCATTTGCAGTTTATTCGG
TCGGTTTTACAAAGTTTTCCAGTTTTTGGTTCAATGTGTTTGTTTTACCTGCTAGTGTTACTCAGGAGGTTGACCGATTCTTCGAGCTTTCTTACGGAGAGGTCGTTGGA
AGGGAGGGGTGGTATGTGGATTACTTGGAGGGGAGGTATGGTTCGCGTTGGATGGCTTGGTTGGAGGAGTACATTTTGAGGGGAGGCGTTGTCATGTTTGGCTTGATCTG
TGGCTACTTTGTGGTCCCATTTTGGCTTAGTATGGAGTTGGTGGAGCTATCGGGGTTGGCTCAAGGTATTCAGCCTAGAGTGGGGTTTGAGGATAAGTGGTTGTGGGTCC
CGAGTGCTTCTGGTAAGTTCTCTGAAAGGAATCGTTGGTTGCATGGTGGTTCTCCTCGAGATGCGTCCATGATCTTGCATCTCATCATCTCGACTATCCATGCTCGTGTT
GCGTCGTGGCCTAATGATGTGTCAGGTCAACTGAGGCCGACACATCCTCTTCTAACACCTTTAAATGCAATCTGCTTCCCTTTCCTTGGCGTCGAAGGCTCCGTTGGGAC
TGCAGGCCGTATAACTTCGACAACTGGCTTGTCTTTCATTGGCATAGTTGGCGTTGGTGCAGTAAACTACATGAGCTTGAATATGGAATATGAGGTGGTCAAAGCTTGTT
GTAGCAGCTCCTTGGCTCTCGACCTTGGGACCTTGAGGCATGCCAATTGA

mRNA sequence

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Protein sequence

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MFVAGVDVSEANELAQFMGFTLGSLPVHYLGLPLLTGRLKASDCIPPDSDDYSESEELVGEVAFLCWSFAVYSVGFTKFSSFWFNVFVLPASVTQEVDRFFELSYGEVVG
REGWYVDYLEGRYGSRWMAWLEEYILRGGVVMFGLICGYFVVPFWLSMELVELSGLAQGIQPRVGFEDKWLWVPSASGKFSERNRWLHGGSPRDASMILHLIISTIHARV
ASWPNDVSGQLRPTHPLLTPLNAICFPFLGVEGSVGTAGRITSTTGLSFIGIVGVGAVNYMSLNMEYEVVKACCSSSLALDLGTLRHAN

ClCG08G003810 (gene) of Watermelon (Charleston Gray) v2.5 genome