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ClCG08G004090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G004090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein BTR1
Genome locationCG_Chr08:12854025..12857883
RNA-Seq ExpressionClCG08G004090
SyntenyClCG08G004090
Gene Ontology termsGO:0010468 - regulation of gene expression (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR009019 - K homology domain superfamily, prokaryotic type
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142445.1 protein BTR1 isoform X1 [Cucumis sativus]7.9e-5484.03Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

XP_008446807.1 PREDICTED: protein BTR1 [Cucumis melo]1.8e-5383.33Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNM+KATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

XP_011655857.1 protein BTR1 isoform X2 [Cucumis sativus]7.9e-5484.03Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

XP_022139256.1 protein BTR1 [Momordica charantia]1.8e-5383.33Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNM+KATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

XP_038893255.1 protein BTR1 [Benincasa hispida]7.9e-5484.03Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

TrEMBL top hitse value%identityAlignment
A0A0A0KWP6 Uncharacterized protein3.8e-5484.03Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

A0A1S3BFZ8 protein BTR18.5e-5483.33Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNM+KATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

A0A6J1CC53 protein BTR18.5e-5483.33Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNM+KATYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

A0A6J1G0Z7 protein BTR15.5e-5381.94Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEK TYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+L
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

A0A6J1HU77 protein BTR1-like5.5e-5381.94Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TESSYVSSPEAPAKRSPPPPKSPNSDNMEK TYIRFL                     SQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+L
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        VLAKLLSELHAEEGDDVEPRTKVRLIV HSSCGAIIGKGGSTIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

SwissProt top hitse value%identityAlignment
Q2PFW9 RNA-binding protein Nova-12.8e-0933.33Show/hide
Query:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST
        T ++   ++GA I+LS++ +F+PGTT+R+ ++ G++ E L A+   +A+ + E+       E    ++P+T        +V++IV +S+ G IIGKGG+T
Subjt:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST

Query:  IK
        +K
Subjt:  IK

Q80WA4 RNA-binding protein Nova-1 (Fragment)2.1e-0934.31Show/hide
Query:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST
        T ++   ++GA I+LS++ +F+PGTT+R+ ++ G+I E L A+   +A+ + E+       E    ++P+T        +V++IV +S+ G IIGKGG+T
Subjt:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST

Query:  IK
        +K
Subjt:  IK

Q9JKN6 RNA-binding protein Nova-11.3e-0627.78Show/hide
Query:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----------------------------
        T ++   ++GA I+LS++ +F+PGTT+R+ ++ G+I E L A+   +A+ + E+       E    ++P+T                             
Subjt:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT-----------------------------

Query:  ---KVRLIVSHSSCGAIIGKGGSTIK
           +V++IV +S+ G IIGKGG+T+K
Subjt:  ---KVRLIVSHSSCGAIIGKGGSTIK

Q9LZ82 Protein BTR16.5e-3556.94Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TES    SPE  AKRSP P  S  +D+ EK T+IRFL                     ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        +L KL SELHAE+G++VEPR ++RL+V +SSCG IIGKGG+TIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

Q9UNW9 RNA-binding protein Nova-21.0e-0834.31Show/hide
Query:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST
        T ++   ++GA I+LS++ +F+PGTT+R+ +V G+  E L A+   +A+ + E+       E  + ++P+T        + +LIV +S+ G IIGKGG+T
Subjt:  TYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSEL-----HAEEGDDVEPRT--------KVRLIVSHSSCGAIIGKGGST

Query:  IK
        +K
Subjt:  IK

Arabidopsis top hitse value%identityAlignment
AT1G33680.1 KH domain-containing protein3.6e-0432.97Show/hide
Query:  IRFLS-QSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR---TKVRLIVSHSSCGAIIGKGGSTIK
        +R+L   SGA+IQ+ R+ E  P +  R + + G+++ I KA +L+ A +++E+ A     +  R    ++ + V     G IIG+GG TIK
Subjt:  IRFLS-QSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR---TKVRLIVSHSSCGAIIGKGGSTIK

AT5G04430.1 binding to TOMV RNA 1L (long form)4.6e-3656.94Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TES    SPE  AKRSP P  S  +D+ EK T+IRFL                     ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        +L KL SELHAE+G++VEPR ++RL+V +SSCG IIGKGG+TIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK

AT5G04430.2 binding to TOMV RNA 1L (long form)4.6e-3656.94Show/hide
Query:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL
        ME TES    SPE  AKRSP P  S  +D+ EK T+IRFL                     ++SGARIQLSRN EFFPGTTDRIIM+SGSI E++  +EL
Subjt:  MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFL---------------------SQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMEL

Query:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK
        +L KL SELHAE+G++VEPR ++RL+V +SSCG IIGKGG+TIK
Subjt:  VLAKLLSELHAEEGDDVEPRTKVRLIVSHSSCGAIIGKGGSTIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCCACTGAGTCTTCATACGTCTCGTCCCCGGAGGCTCCTGCGAAGCGATCTCCTCCGCCGCCAAAATCTCCAAACTCGGATAATATGGAAAAGGCTACATACAT
AAGGTTTCTTTCACAGTCTGGTGCACGAATCCAATTGTCACGGAACCATGAATTTTTTCCTGGAACCACTGATAGGATCATTATGGTATCTGGATCAATTAATGAAATAC
TGAAGGCCATGGAACTCGTTCTTGCTAAGTTGTTGAGTGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCGAGAACGAAAGTGAGACTAATTGTTTCCCATAGTTCA
TGTGGAGCTATAATTGGCAAAGGAGGATCCACTATAAAGTTCCTGGACAAGGCCATTGAAGTAAGGAAACCCACCAACCAAGATATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCCACTGAGTCTTCATACGTCTCGTCCCCGGAGGCTCCTGCGAAGCGATCTCCTCCGCCGCCAAAATCTCCAAACTCGGATAATATGGAAAAGGCTACATACAT
AAGGTTTCTTTCACAGTCTGGTGCACGAATCCAATTGTCACGGAACCATGAATTTTTTCCTGGAACCACTGATAGGATCATTATGGTATCTGGATCAATTAATGAAATAC
TGAAGGCCATGGAACTCGTTCTTGCTAAGTTGTTGAGTGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCGAGAACGAAAGTGAGACTAATTGTTTCCCATAGTTCA
TGTGGAGCTATAATTGGCAAAGGAGGATCCACTATAAAGTTCCTGGACAAGGCCATTGAAGTAAGGAAACCCACCAACCAAGATATTTAA
Protein sequenceShow/hide protein sequence
MEPTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVSHSS
CGAIIGKGGSTIKFLDKAIEVRKPTNQDI