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ClCG08G004195 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G004195
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr08:13349603..13350064
RNA-Seq ExpressionClCG08G004195
SyntenyClCG08G004195
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1827961.1 unnamed protein product [Ananas comosus var. bracteatus]3.3e-1845.28Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        KSR +  KH WT +ED  L+ECL++   SG+W+ADNGTFR  +L  + + M +R+ GC ++  P +ESR +  KRQY+AI+EMLG AV G     +    
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRTA
         C++TA
Subjt:  ECKRTA

CAD1831704.1 unnamed protein product [Ananas comosus var. bracteatus]1.2e-1744.76Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        KSR +  KH WT EED  L+ECL++   SG+W+ADNGTFR  +L  + + M +R+ GC ++  P +ESR +  KRQY+AI+EMLG A  G     +    
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C++T
Subjt:  ECKRT

OAY69002.1 hypothetical protein ACMD2_25538 [Ananas comosus]3.3e-1845.71Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        K R R  KH WT EED  L+ECL+    SGHW+ADNG FR  FL  + ++M +++ GC ++  P + SR++  KRQY+AIAEMLG AV G        + 
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C+R+
Subjt:  ECKRT

XP_020080004.1 uncharacterized protein LOC109703694 [Ananas comosus]5.6e-1845.71Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        K R R  KH WT EED  L+ECL+    SGHW+ADNG FR  FL  + ++M +++ GC +   P + SR++  KRQY+AIAEMLG AV G        + 
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C+R+
Subjt:  ECKRT

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]4.3e-1848.31Show/hide
Query:  SRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVG
        S +RA KH+WT EE+  LVEC+V+ V +G W++DNGTFRP +L+ +L+MM  ++ GC++  +  ++ R++TLKR Y AIAEM G +  G
Subjt:  SRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVG

TrEMBL top hitse value%identityAlignment
A0A199UW10 Myb_DNA-bind_3 domain-containing protein1.6e-1845.71Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        K R R  KH WT EED  L+ECL+    SGHW+ADNG FR  FL  + ++M +++ GC ++  P + SR++  KRQY+AIAEMLG AV G        + 
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C+R+
Subjt:  ECKRT

A0A5A7UI78 Retrotransposon protein1.7e-1747.67Show/hide
Query:  RAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVG
        RA +H+WT EE+  LVECL++ V  G W++DNGTFRP +L+ +++MM +++ GC ++V+  ++ R++TLKR + AIAEM G A  G
Subjt:  RAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVG

A0A6P5E9X0 uncharacterized protein LOC1097036942.7e-1845.71Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        K R R  KH WT EED  L+ECL+    SGHW+ADNG FR  FL  + ++M +++ GC +   P + SR++  KRQY+AIAEMLG AV G        + 
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C+R+
Subjt:  ECKRT

A0A6V7PAW0 Myb_DNA-bind_3 domain-containing protein1.6e-1845.28Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        KSR +  KH WT +ED  L+ECL++   SG+W+ADNGTFR  +L  + + M +R+ GC ++  P +ESR +  KRQY+AI+EMLG AV G     +    
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRTA
         C++TA
Subjt:  ECKRTA

A0A6V7PLJ8 Myb_DNA-bind_3 domain-containing protein6.0e-1844.76Show/hide
Query:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS
        KSR +  KH WT EED  L+ECL++   SG+W+ADNGTFR  +L  + + M +R+ GC ++  P +ESR +  KRQY+AI+EMLG A  G     +    
Subjt:  KSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSS

Query:  ECKRT
         C++T
Subjt:  ECKRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATTCAAGTCACGTGCAAGAGCTGCAAAACATATTTGGACGGATGAGGAGGACAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCA
AGCTGATAACGGAACTTTCCGACCTAGATTCCTATCAAACGTACTACAGATGATGCAGCAGAGGATACTAGGGTGTTCCATACAGGTAAGCCCACGTCTGGAGTCAAGGG
TCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATTCATCCGAGTGCAAAAGGACTGCG
CCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATTCAAGTCACGTGCAAGAGCTGCAAAACATATTTGGACGGATGAGGAGGACAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCA
AGCTGATAACGGAACTTTCCGACCTAGATTCCTATCAAACGTACTACAGATGATGCAGCAGAGGATACTAGGGTGTTCCATACAGGTAAGCCCACGTCTGGAGTCAAGGG
TCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATTCATCCGAGTGCAAAAGGACTGCG
CCATAA
Protein sequenceShow/hide protein sequence
MEAFKSRARAAKHIWTDEEDRILVECLVQCVQSGHWQADNGTFRPRFLSNVLQMMQQRILGCSIQVSPRLESRVRTLKRQYSAIAEMLGQAVVGLVGMRSANSSECKRTA
P