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ClCG08G004530 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G004530
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr08:14295421..14296553
RNA-Seq ExpressionClCG08G004530
SyntenyClCG08G004530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.1e-0727.98Show/hide
Query:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------------------ETLEDITSNLPEHMDEGVHFNASKEYNIP
        M + ++ +DLD+ +S  ATT GD+IN+IE SN W++WR                                 ET  D+ SN+P   +  V  + S + +IP
Subjt:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------------------ETLEDITSNLPEHMDEGVHFNASKEYNIP

Query:  ISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMDIQNSQLRTIEEWPK
        +    + G+ MS ++M G    Q + + N S+             VEV++  ++  N QL+ I  WPK
Subjt:  ISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMDIQNSQLRTIEEWPK

KAA0040620.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-0630.89Show/hide
Query:  DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMV
        D     D+++++S  AT  G +IN+IE SN+W++W++ L  I  +  E  D   H   S  +++ I +  + G+DMS ++M G                V
Subjt:  DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMV

Query:  EVVRDVMDIQNSQLRTIEEWPKR
        EV+R+ ++  N QL+ I  WPK+
Subjt:  EVVRDVMDIQNSQLRTIEEWPKR

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.6e-0432.17Show/hide
Query:  DKINFIEISNEWTKWR-ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMD
        D ++++   +  TK R ET   + SN+P   ++GV    S   +IP+    + G+ MS ++M G    Q + + N S+            MVEV+R VM 
Subjt:  DKINFIEISNEWTKWR-ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMD

Query:  IQNSQLRTIEEWPKR
          N+QL+TI +WPK+
Subjt:  IQNSQLRTIEEWPKR

XP_038885881.1 protein ALP1-like [Benincasa hispida]9.6e-0456.1Show/hide
Query:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETL
        M + +L EDLD+++S+ ATT+G++IN+IE SNEWT+WR  L
Subjt:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETL

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI15.3e-0827.98Show/hide
Query:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------------------ETLEDITSNLPEHMDEGVHFNASKEYNIP
        M + ++ +DLD+ +S  ATT GD+IN+IE SN W++WR                                 ET  D+ SN+P   +  V  + S + +IP
Subjt:  MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWR---------------------------------ETLEDITSNLPEHMDEGVHFNASKEYNIP

Query:  ISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMDIQNSQLRTIEEWPK
        +    + G+ MS ++M G    Q + + N S+             VEV++  ++  N QL+ I  WPK
Subjt:  ISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMDIQNSQLRTIEEWPK

A0A5A7USN6 Putative nuclease HARBI14.7e-0432.17Show/hide
Query:  DKINFIEISNEWTKWR-ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMD
        D ++++   +  TK R ET   + SN+P   ++GV    S   +IP+    + G+ MS ++M G    Q + + N S+            MVEV+R VM 
Subjt:  DKINFIEISNEWTKWR-ETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNAST-----------RMVEVVRDVMD

Query:  IQNSQLRTIEEWPKR
          N+QL+TI +WPK+
Subjt:  IQNSQLRTIEEWPKR

A0A5D3C1H4 Retrotransposon protein1.7e-0630.89Show/hide
Query:  DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMV
        D     D+++++S  AT  G +IN+IE SN+W++W++ L  I  +  E  D   H   S  +++ I +  + G+DMS ++M G                V
Subjt:  DCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMV

Query:  EVVRDVMDIQNSQLRTIEEWPKR
        EV+R+ ++  N QL+ I  WPK+
Subjt:  EVVRDVMDIQNSQLRTIEEWPKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACTGTAAACTGCCCGAGGATTTGGATGATATGAACTCAAATTTGGCTACCACTAAGGGAGACAAGATCAATTTCATTGAGATATCAAATGAATGGACCAAGTG
GAGAGAGACCCTTGAAGACATAACGTCAAATTTGCCAGAGCATATGGACGAAGGTGTTCACTTCAATGCATCAAAAGAATACAACATCCCAATATCATCATTTCTTAATC
ATGGAATGGATATGTCACAAAATGATATGCAAGGAACACCCACTAGTCAAAACACTCCAAAAGGAAATGCATCCACGAGGATGGTAGAGGTTGTTAGGGATGTGATGGAC
ATCCAAAATAGCCAACTGAGGACGATTGAAGAATGGCCAAAGAGAATTGTGCAACAAAGTTCAGTTTACATGTTGCAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACTGTAAACTGCCCGAGGATTTGGATGATATGAACTCAAATTTGGCTACCACTAAGGGAGACAAGATCAATTTCATTGAGATATCAAATGAATGGACCAAGTG
GAGAGAGACCCTTGAAGACATAACGTCAAATTTGCCAGAGCATATGGACGAAGGTGTTCACTTCAATGCATCAAAAGAATACAACATCCCAATATCATCATTTCTTAATC
ATGGAATGGATATGTCACAAAATGATATGCAAGGAACACCCACTAGTCAAAACACTCCAAAAGGAAATGCATCCACGAGGATGGTAGAGGTTGTTAGGGATGTGATGGAC
ATCCAAAATAGCCAACTGAGGACGATTGAAGAATGGCCAAAGAGAATTGTGCAACAAAGTTCAGTTTACATGTTGCAGCAGTGA
Protein sequenceShow/hide protein sequence
MGDCKLPEDLDDMNSNLATTKGDKINFIEISNEWTKWRETLEDITSNLPEHMDEGVHFNASKEYNIPISSFLNHGMDMSQNDMQGTPTSQNTPKGNASTRMVEVVRDVMD
IQNSQLRTIEEWPKRIVQQSSVYMLQQ