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ClCG08G004630 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G004630
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr08:14683970..14684569
RNA-Seq ExpressionClCG08G004630
SyntenyClCG08G004630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.6e-1036.36Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT
        H    C RA+ IW  ++   +   A +N +F E WS++      ++LN+ AIT W IWNDRN++  GK V P+    EW+  + +S   A    YS RT
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT
XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]9.2e-0425.21Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSV-EWILKYYNSFIHASKDEYSGRTWK
        H L  CPRA+ +W              ++  +    +++S    EL +F + CWSIW++RN I  G  V    +V  +   Y   F  A           
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSV-EWILKYYNSFIHASKDEYSGRTWK

Query:  EDLTSTGLGASLRDSNGFL
        + +T++G     R S+ F+
Subjt:  EDLTSTGLGASLRDSNGFL
TrEMBL top hitse value%identityAlignment
A0A2N9EXU0 Reverse transcriptase domain-containing protein1.5e-0424.67Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSVEW-----ILKYYNSFIHASKDE---
        H L  CP    +W    +L       ++++      + +S     L  FA+TCW +WN RN      P   Y+S+ W     +L  Y S I+  K E   
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSVEW-----ILKYYNSFIHASKDE---

Query:  YSGRTWK----------------EDLTSTGLGASLRDSNGFLLDVFAQAL
        +    WK                +D    GLG  +R+  G ++   +Q L
Subjt:  YSGRTWK----------------EDLTSTGLGASLRDSNGFLLDVFAQAL
A0A2N9FQ02 Reverse transcriptase domain-containing protein1.2e-0434.78Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV
        H L  CP  Q  W K   L     +   NF E W  + +  P  +L +F+ TCW+IW+ RN +   +PV
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV
A0A2N9GZG3 Sodium/hydrogen exchanger4.0e-0532.35Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKP
        H L  CP AQ  W     L  +  +   NF + W  +    P  ++ +F+ TCW+IWN RN +   +P
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKP
A0A2N9HK89 Uncharacterized protein4.0e-0532.35Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKP
        H L  CP AQ  W     L  +  +   NF + W  +    P  ++ +F+ TCW+IWN RN +   +P
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKP
A0A6J1DX30 uncharacterized protein LOC1110248744.2e-1036.36Show/hide
Query:  HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT
        H    C RA+ IW  ++   +   A +N +F E WS++      ++LN+ AIT W IWNDRN++  GK V P+    EW+  + +S   A    YS RT
Subjt:  HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATGTGTTAATCAAGTGCCCACGAGCTCAGCTTATCTGGAGCAAAATTTATCAGTTGCCATCTATGGATGATGCCTACAACAACAATTTCGGAGAAAGGTGGTC
AACGATCAACTCTTCTTGTCCAAAGGAAGAGCTCAATATTTTTGCAATTACATGTTGGTCCATCTGGAATGACAGAAACACCATCAATCAGGGGAAACCAGTTCCAATTT
ACACATCAGTAGAGTGGATACTAAAATACTACAACTCTTTTATTCACGCTTCGAAGGATGAGTACAGTGGTCGAACTTGGAAGGAAGACCTAACTTCAACAGGGCTGGGG
GCGTCATTAAGAGATTCGAATGGCTTCCTCCTCGACGTTTTTGCCCAAGCTCTTGAACTGGACTTTGCCCCCCCCCCCCCCCCCCCCTCCGGCAGAGTTATTGGCTATTC
GAGAAGCTCTTTAATGGGCTCTTCTCCAAAACTTTTCCAACTTAATCATCAAATCAAATTGTCTGCAGGCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCATGTGTTAATCAAGTGCCCACGAGCTCAGCTTATCTGGAGCAAAATTTATCAGTTGCCATCTATGGATGATGCCTACAACAACAATTTCGGAGAAAGGTGGTC
AACGATCAACTCTTCTTGTCCAAAGGAAGAGCTCAATATTTTTGCAATTACATGTTGGTCCATCTGGAATGACAGAAACACCATCAATCAGGGGAAACCAGTTCCAATTT
ACACATCAGTAGAGTGGATACTAAAATACTACAACTCTTTTATTCACGCTTCGAAGGATGAGTACAGTGGTCGAACTTGGAAGGAAGACCTAACTTCAACAGGGCTGGGG
GCGTCATTAAGAGATTCGAATGGCTTCCTCCTCGACGTTTTTGCCCAAGCTCTTGAACTGGACTTTGCCCCCCCCCCCCCCCCCCCCTCCGGCAGAGTTATTGGCTATTC
GAGAAGCTCTTTAATGGGCTCTTCTCCAAAACTTTTCCAACTTAATCATCAAATCAAATTGTCTGCAGGCTATTAA
Protein sequenceShow/hide protein sequence
MDHVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSVEWILKYYNSFIHASKDEYSGRTWKEDLTSTGLG
ASLRDSNGFLLDVFAQALELDFAPPPPPPSGRVIGYSRSSLMGSSPKLFQLNHQIKLSAGY