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ClCG08G005000 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G005000
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr08:15755895..15756326
RNA-Seq ExpressionClCG08G005000
SyntenyClCG08G005000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.3e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.3e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

TYK21642.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.4e-1050.75Show/hide
Query:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK
        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+ + K
Subjt:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.4e-1050.75Show/hide
Query:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK
        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+ + K
Subjt:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]9.3e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein4.5e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein4.5e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

A0A5D3DDH2 LINE-1 retrotransposable element ORF2 protein2.6e-1050.75Show/hide
Query:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK
        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+ + K
Subjt:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein2.6e-1050.75Show/hide
Query:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK
        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+ + K
Subjt:  QNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEK

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein4.5e-1047.37Show/hide
Query:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY
        T+P+T        +N++AFVK +QI          IDYWR + +  F+IKL  EKAFDK NW  IDFML+KKG+P+
Subjt:  TIPFTELCVQDSCQNELAFVKHKQI----------IDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAAGGCAACTCACTATTCCATTCACTGAGCTCTGTGTACAAGATTCTTGCCAAAACGAATTAGCTTTCGTTAAACATAAACAGATTATTGATTACTGGAGATGCGAAAC
GGTCAGTGATTTTATAATTAAGCTTCATTTTGAGAAAGCCTTCGACAAAAGAAATTGGATGTTGATTGACTTTATGTTATTAAAGAAAGGTTTCCCTTACACTTTTGAGA
AAATAGATTTCCACTGGTATCTCTTCGGTTAA
mRNA sequenceShow/hide mRNA sequence
AGAAGGCAACTCACTATTCCATTCACTGAGCTCTGTGTACAAGATTCTTGCCAAAACGAATTAGCTTTCGTTAAACATAAACAGATTATTGATTACTGGAGATGCGAAAC
GGTCAGTGATTTTATAATTAAGCTTCATTTTGAGAAAGCCTTCGACAAAAGAAATTGGATGTTGATTGACTTTATGTTATTAAAGAAAGGTTTCCCTTACACTTTTGAGA
AAATAGATTTCCACTGGTATCTCTTCGGTTAA
Protein sequenceShow/hide protein sequence
RRQLTIPFTELCVQDSCQNELAFVKHKQIIDYWRCETVSDFIIKLHFEKAFDKRNWMLIDFMLLKKGFPYTFEKIDFHWYLFG