; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG08G005205 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G005205
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr08:16436930..16437956
RNA-Seq ExpressionClCG08G005205
SyntenyClCG08G005205
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-2332.35Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVNLRYSTRGSSHPSAKGPRHKSFPFYD
        SKA+KH W   ED  LV+CL+Q V+   WRA+N TF+PG     + +         G +           I      +      H +A+G  +K+FP++ 
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVNLRYSTRGSSHPSAKGPRHKSFPFYD

Query:  DLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLSM
        DL +VF +DRAT  R  T  ++ S+ A + E     D+  ++ ++F IPN      P+ ED+ +TP S    AGSS P + +R          S  G  +
Subjt:  DLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLSM

Query:  QDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR
         +  +   SLL DP +L   +D+P +WKY  CM +L R
Subjt:  QDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2434.73Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY
        SKA+KH W   ED +LV CL+Q V+   WRA+N TF+PG       +Q++AIAEM+G    G         I      +      HP A+G  +K FP++
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY

Query:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLS
         DL +VF +DRATG R                              F IPN      P+ ED+P+TP S    AGSS P + +R          S  G  
Subjt:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLS

Query:  MQDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR
        + D      SLL DP +L   +D+P +WKY  CM +L R
Subjt:  MQDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.4e-2935.56Show/hide
Query:  EASRSCSKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN--ISTVNLRYSTRGSSHPSAKGPR
        E + + SKA+KH W   ED +LV+CL+Q V+   WRA+N TF+ G       +Q++AIAEM+G    G  G   G   I      +      HP+A+G  
Subjt:  EASRSCSKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN--ISTVNLRYSTRGSSHPSAKGPR

Query:  HKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGS--KGAGSSMPKRTKR---------
        +K FP++ DL +VF +DRATG R  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AGSS P + +R         
Subjt:  HKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGS--KGAGSSMPKRTKR---------

Query:  -----------------------------HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFP
                                     H+R LYAELQ+IPG+ + D L VA SLL DP +L   +D+P
Subjt:  -----------------------------HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFP

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]2.4e-2132.02Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPG-------------------------SKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVN
        SK +KH W   ED  LV+CL+Q V+   WR +N TF+PG                         S V+ LK+Q++ IAEM+G    G    +        
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPG-------------------------SKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVN

Query:  LRYSTRG-SSHPSAKGPRHKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AG
           S      H +A+   +K FP++ DL IVF +DRATG +  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AG
Subjt:  LRYSTRG-SSHPSAKGPRHKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AG

Query:  SSMPKRTKR-HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFPPQ
        SS P + +R + R+L             D      SLL DP +L   +D+P +
Subjt:  SSMPKRTKR-HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFPPQ

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.1e-2138.8Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY
        SKA+KH W   ED  LV+CL+Q V+   WRA+N TF+PG       +Q++AIAEM+GQ   G         I      +      HP+A+   +K FP++
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY

Query:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTK
         DL IVF +D ATG+R  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AGSS P + K
Subjt:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTK

TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like5.3e-2238.8Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY
        SKA+KH W   ED  LV+CL+Q V+   WRA+N TF+PG       +Q++AIAEM+GQ   G         I      +      HP+A+   +K FP++
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY

Query:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTK
         DL IVF +D ATG+R  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AGSS P + K
Subjt:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTK

A0A5A7VE44 Retrotransposon protein1.3e-2332.35Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVNLRYSTRGSSHPSAKGPRHKSFPFYD
        SKA+KH W   ED  LV+CL+Q V+   WRA+N TF+PG     + +         G +           I      +      H +A+G  +K+FP++ 
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVNLRYSTRGSSHPSAKGPRHKSFPFYD

Query:  DLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLSM
        DL +VF +DRAT  R  T  ++ S+ A + E     D+  ++ ++F IPN      P+ ED+ +TP S    AGSS P + +R          S  G  +
Subjt:  DLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLSM

Query:  QDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR
         +  +   SLL DP +L   +D+P +WKY  CM +L R
Subjt:  QDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR

A0A5D3C542 Retrotransposon protein8.7e-2534.73Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY
        SKA+KH W   ED +LV CL+Q V+   WRA+N TF+PG       +Q++AIAEM+G    G         I      +      HP A+G  +K FP++
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN-ISTVNLRYSTRGSSHPSAKGPRHKSFPFY

Query:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLS
         DL +VF +DRATG R                              F IPN      P+ ED+P+TP S    AGSS P + +R          S  G  
Subjt:  DDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AGSSMPKRTKRHRRELYAELQSIPGLS

Query:  MQDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR
        + D      SLL DP +L   +D+P +WKY  CM +L R
Subjt:  MQDGLNVARSLLADPMLLSHLVDFPPQWKYDYCMEVLRR

A0A5D3C7T4 Uncharacterized protein1.2e-2935.56Show/hide
Query:  EASRSCSKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN--ISTVNLRYSTRGSSHPSAKGPR
        E + + SKA+KH W   ED +LV+CL+Q V+   WRA+N TF+ G       +Q++AIAEM+G    G  G   G   I      +      HP+A+G  
Subjt:  EASRSCSKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGN--ISTVNLRYSTRGSSHPSAKGPR

Query:  HKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGS--KGAGSSMPKRTKR---------
        +K FP++ DL +VF +DRATG R  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AGSS P + +R         
Subjt:  HKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGS--KGAGSSMPKRTKR---------

Query:  -----------------------------HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFP
                                     H+R LYAELQ+IPG+ + D L VA SLL DP +L   +D+P
Subjt:  -----------------------------HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFP

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein1.2e-2132.02Show/hide
Query:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPG-------------------------SKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVN
        SK +KH W   ED  LV+CL+Q V+   WR +N TF+PG                         S V+ LK+Q++ IAEM+G    G    +        
Subjt:  SKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPG-------------------------SKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVN

Query:  LRYSTRG-SSHPSAKGPRHKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AG
           S      H +A+   +K FP++ DL IVF +DRATG +  T  E+ S+ A + E     D+  ++ ++F IPN      P+ ED+P+TP S    AG
Subjt:  LRYSTRG-SSHPSAKGPRHKSFPFYDDLAIVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKG--AG

Query:  SSMPKRTKR-HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFPPQ
        SS P + +R + R+L             D      SLL DP +L   +D+P +
Subjt:  SSMPKRTKR-HRRELYAELQSIPGLSMQDGLNVARSLLADPMLLSHLVDFPPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATCACGATCGTGCTCTAAGGCCTCCAAACATATATGGATGGATGAGGAGGACAGAATTCTGGTTGACTGTTTGGTTCAATGTGTGCAATCTAAACACTGGCG
AGCTAACAATAGCACATTCCGACCTGGGTCCAAGGTGAGGACGTTGAAGAGACAATGGAGCGCGATCGCTGAAATGTTGGGTCAAGATGTAGTGGGTTCAGTTGGAACGC
GCAGTGGAAATATATCAACTGTGAATCTAAGATATTCGACGCGTGGGTCAAGTCATCCAAGTGCGAAAGGACCCAGGCATAAGTCATTTCCGTTCTATGATGACCTGGCG
ATTGTATTTAGCAAAGACAGAGCAACAGGGAATCGTGCCACTACTACTACTGAGGTCAGATCTGAACCTGCACTAGAAGAGGAGAACAACAACATTTTAGATAATCAATC
TCTAGACTTTGATAATTTCTACATTCCTAATCTACCATTCGCTAGCTCACCCACATCAGAAGACCTTCCAACTACTCCGGGTAGTAAAGGGGCTGGGAGTAGCATGCCAA
AAAGAACAAAGCGTCATCGTAGAGAATTGTACGCTGAGCTACAATCAATCCCTGGATTGTCAATGCAAGATGGGTTAAATGTTGCACGGTCATTGCTTGCAGATCCAATG
TTGTTAAGCCACCTCGTGGACTTCCCACCGCAATGGAAGTATGATTATTGCATGGAAGTCCTCAGGCGATCGCGGAATGAAACACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATCACGATCGTGCTCTAAGGCCTCCAAACATATATGGATGGATGAGGAGGACAGAATTCTGGTTGACTGTTTGGTTCAATGTGTGCAATCTAAACACTGGCG
AGCTAACAATAGCACATTCCGACCTGGGTCCAAGGTGAGGACGTTGAAGAGACAATGGAGCGCGATCGCTGAAATGTTGGGTCAAGATGTAGTGGGTTCAGTTGGAACGC
GCAGTGGAAATATATCAACTGTGAATCTAAGATATTCGACGCGTGGGTCAAGTCATCCAAGTGCGAAAGGACCCAGGCATAAGTCATTTCCGTTCTATGATGACCTGGCG
ATTGTATTTAGCAAAGACAGAGCAACAGGGAATCGTGCCACTACTACTACTGAGGTCAGATCTGAACCTGCACTAGAAGAGGAGAACAACAACATTTTAGATAATCAATC
TCTAGACTTTGATAATTTCTACATTCCTAATCTACCATTCGCTAGCTCACCCACATCAGAAGACCTTCCAACTACTCCGGGTAGTAAAGGGGCTGGGAGTAGCATGCCAA
AAAGAACAAAGCGTCATCGTAGAGAATTGTACGCTGAGCTACAATCAATCCCTGGATTGTCAATGCAAGATGGGTTAAATGTTGCACGGTCATTGCTTGCAGATCCAATG
TTGTTAAGCCACCTCGTGGACTTCCCACCGCAATGGAAGTATGATTATTGCATGGAAGTCCTCAGGCGATCGCGGAATGAAACACCATGA
Protein sequenceShow/hide protein sequence
MEASRSCSKASKHIWMDEEDRILVDCLVQCVQSKHWRANNSTFRPGSKVRTLKRQWSAIAEMLGQDVVGSVGTRSGNISTVNLRYSTRGSSHPSAKGPRHKSFPFYDDLA
IVFSKDRATGNRATTTTEVRSEPALEEENNNILDNQSLDFDNFYIPNLPFASSPTSEDLPTTPGSKGAGSSMPKRTKRHRRELYAELQSIPGLSMQDGLNVARSLLADPM
LLSHLVDFPPQWKYDYCMEVLRRSRNETP