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ClCG08G005280 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G005280
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr08:16681737..16682270
RNA-Seq ExpressionClCG08G005280
SyntenyClCG08G005280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041372.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0545.16Show/hide
Query:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        MW    NDWD+Q +R L D +VQ     KV  +A N +RG  +PIWKI  +G F I ++K A
Subjt:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
KAA0056929.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0439.34Show/hide
Query:  WKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        W+   +DW+ QPRR +   +V      + +F A + +RG D PIWK  S+G F I++IK+A
Subjt:  WKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
TYK21646.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.3e-0645.16Show/hide
Query:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        MW    NDWD+Q +R L D +VQ     KV  +A N +RG  +PIWKI  +G F I+++K A
Subjt:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
TrEMBL top hitse value%identityAlignment
A0A5A7TD61 LINE-1 retrotransposable element ORF2 protein7.9e-0645.16Show/hide
Query:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        MW    NDWD+Q +R L D +VQ     KV  +A N +RG  +PIWKI  +G F I ++K A
Subjt:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
A0A5D3DDJ7 LINE-1 retrotransposable element ORF2 protein3.6e-0645.16Show/hide
Query:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        MW    NDWD+Q +R L D +VQ     KV  +A N +RG  +PIWKI  +G F I+++K A
Subjt:  MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
A0A5D3DS76 LINE-1 retrotransposable element ORF2 protein6.7e-0539.34Show/hide
Query:  WKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
        W+   +DW+ QPRR +   +V      + +F A + +RG D PIWK  S+G F I++IK+A
Subjt:  WKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAATATGATATTAATGATTGGGACTTACAACCTCGAAGAGCTCTCTTAGACAAAGATGTACAATCATCGGTTGCTTCAAAAGTGGCTTTCCTCGCTCTAAACAA
TAACCGGGGAATGGATACTCCAATTTGGAAAATTCGCAGCAATGGTACTTTCCATATATCCACTATCAAAGAAGCTTTCTTTACACATCTTTGGGCTTGTTTACAAGCAG
CTTTAGATATAATTGGGGCGCATAACTCTTATGTCCAAGAAAAATGCAAAATTTCCTGTGGTTTGATTCATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAATATGATATTAATGATTGGGACTTACAACCTCGAAGAGCTCTCTTAGACAAAGATGTACAATCATCGGTTGCTTCAAAAGTGGCTTTCCTCGCTCTAAACAA
TAACCGGGGAATGGATACTCCAATTTGGAAAATTCGCAGCAATGGTACTTTCCATATATCCACTATCAAAGAAGCTTTCTTTACACATCTTTGGGCTTGTTTACAAGCAG
CTTTAGATATAATTGGGGCGCATAACTCTTATGTCCAAGAAAAATGCAAAATTTCCTGTGGTTTGATTCATAAATAA
Protein sequenceShow/hide protein sequence
MWKYDINDWDLQPRRALLDKDVQSSVASKVAFLALNNNRGMDTPIWKIRSNGTFHISTIKEAFFTHLWACLQAALDIIGAHNSYVQEKCKISCGLIHK