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ClCG08G005290 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G005290
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr08:16682316..16682919
RNA-Seq ExpressionClCG08G005290
SyntenyClCG08G005290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048676.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-0645.68Show/hide
Query:  KRKGALAYQR-------CLTPTLCYYANDFRDSMQKTSLSGKKQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
        K KG L   R        LT  LC Y  +             K II AKY + F   IP  GKYSS+ APWRSIIKGKDWF
Subjt:  KRKGALAYQR-------CLTPTLCYYANDFRDSMQKTSLSGKKQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
TrEMBL top hitse value%identityAlignment
A0A5A7U366 LINE-1 retrotransposable element ORF2 protein3.8e-0645.68Show/hide
Query:  KRKGALAYQR-------CLTPTLCYYANDFRDSMQKTSLSGKKQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
        K KG L   R        LT  LC Y  +             K II AKY + F   IP  GKYSS+ APWRSIIKGKDWF
Subjt:  KRKGALAYQR-------CLTPTLCYYANDFRDSMQKTSLSGKKQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
A0A5D3BJ44 Retrotransposon protein, putative, unclassified6.0e-0458.97Show/hide
Query:  KQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
        KQ I AKY  N +   P + K+S AKAPWRSI+KG+DWF
Subjt:  KQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACAAGAAAAGCTGGGAATTTCCTCTAAAAATGTAGCTCTAATGAGCACCACCCTCATCTGGTCCGTTGGTCCATTGTTACAACACCAAAAAAGGAAGGGGGCCTT
GGCATATCAAAGATGTCTGACACCGACTTTGTGCTACTATGCAAATGATTTTAGAGATTCTATGCAGAAGACAAGCCTCTCTGGAAAAAAACAAATTATCCTGGCCAAAT
ACAAACAAAACTTCATTGATGATATTCCTCGCAATGGGAAATATAGTAGTGCTAAAGCTCCTTGGAGATCTATAATCAAAGGAAAGGATTGGTTCATCGCAAATTTTGAA
AAGTTAACAACGGTGAGAAGATCTCCTTTTGGAAAAGCAATTGGAATTCTCATAGTTCCCCTAGCTGATAGCGTCCTC
mRNA sequenceShow/hide mRNA sequence
CACCTTTGGGTGGCAAACCAAGTTTTGCTCATTTTTGGGATCAAATTGTCGAGATGATACAAGAAAAGCTGGGAATTTCCTCTAAAAATGTAGCTCTAATGAGCACCACC
CTCATCTGGTCCGTTGGTCCATTGTTACAACACCAAAAAAGGAAGGGGGCCTTGGCATATCAAAGATGTCTGACACCGACTTTGTGCTACTATGCAAATGATTTTAGAGA
TTCTATGCAGAAGACAAGCCTCTCTGGAAAAAAACAAATTATCCTGGCCAAATACAAACAAAACTTCATTGATGATATTCCTCGCAATGGGAAATATAGTAGTGCTAAAG
CTCCTTGGAGATCTATAATCAAAGGAAAGGATTGGTTCATCGCAAATTTTGAAAAGTTAACAACGGTGAGAAGATCTCCTTTTGGAAAAGCAATTGGAATTCTCATAGTT
CCCCTAGCTGATAGCGTCCTC
Protein sequenceShow/hide protein sequence
MIQEKLGISSKNVALMSTTLIWSVGPLLQHQKRKGALAYQRCLTPTLCYYANDFRDSMQKTSLSGKKQIILAKYKQNFIDDIPRNGKYSSAKAPWRSIIKGKDWFIANFE
KLTTVRRSPFGKAIGILIVPLADSVL