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ClCG08G006560 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G006560
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLeucine-rich repeat (LRR) family protein
Genome locationCG_Chr08:19016325..19016927
RNA-Seq ExpressionClCG08G006560
SyntenyClCG08G006560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058916.1 hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa]3.3e-3754.98Show/hide
Query:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDD-----PQPQARPQ
        MSSS   P+  +G K +LQISN+S+ IKKPPLP K A   PV++YE +  RII V+TP DF YIVQLLTGDPNRPPP +PC CD  D      QP   PQ
Subjt:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDD-----PQPQARPQ

Query:  GILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEW-AEPAALS-SNPIVN-----SPPP-----PAPNFRVPPSPFRTLNTEIPPSFN
        GILSP PTSL PL SP  FT        P P S DQ+   FDLL+E   EP  LS S P++N     SPPP     P P FRV PS +    TEIPPSF 
Subjt:  GILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEW-AEPAALS-SNPIVN-----SPPP-----PAPNFRVPPSPFRTLNTEIPPSFN

Query:  TPLPPLFFPPN
        T  PP+FFPPN
Subjt:  TPLPPLFFPPN

KAE8647157.1 hypothetical protein Csa_018820, partial [Cucumis sativus]1.2e-1847.9Show/hide
Query:  SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTS
        S P RE GRK+VLQIS DSQ IKKPPL       +PVIRY+Y+ D +II VKT  DF YIVQLLTGDPN PPP +PC C       Q R    LSP P  
Subjt:  SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTS

Query:  LPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPF
                         TPPP       L ++ LL     P +L        PPP APNF+VPPSPF
Subjt:  LPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPF

KAG6602166.1 hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia]1.4e-0837.64Show/hide
Query:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLF
        E+  ++ LQIS  S+ I KPPLPP +A  R  +I+Y+  K +II VKTPA+F YIVQLLTG PN PPP       D    P      +LSP P   PP  
Subjt:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLF

Query:  SPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTE-IPPSFNTPL
         PD    S   P P       +E+ I+D   +W EP+             P P   +PP+ F+ + +   P  F+ PL
Subjt:  SPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTE-IPPSFNTPL

XP_022959600.1 extensin-like [Cucurbita moschata]8.5e-0944.35Show/hide
Query:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPK-------HPCTCDDDDPQPQARPQGILSPTP
        E+  ++ LQIS  S+ IKKPPLPP +A  R  +I+Y+  K +II VKTPA+F YIVQLLTG PN PPP         P T     PQP    + +L+P P
Subjt:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPK-------HPCTCDDDDPQPQARPQGILSPTP

Query:  TSLPPLFSPDAFTSSPSPPTPPPP
             ++  D     PS P P PP
Subjt:  TSLPPLFSPDAFTSSPSPPTPPPP

XP_038885909.1 extensin-like [Benincasa hispida]3.7e-7373.64Show/hide
Query:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPP---KTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQ-PQARPQG
        MSSS S P   +GRKE+ QISN+S+KIKKPP PP   KTAA SPV+RYE  + +IIKV+TP DF YIVQLLTGDPNRPPP++PCT +D DPQ P  RPQG
Subjt:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPP---KTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQ-PQARPQG

Query:  ILSPTPTSLPPLFSPDAFTSSPSP----PTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPP------------PPAPNFRVPPSPFRTLNTEIPP
        ILSPTPTSLP L  PDAFT SPSP    P P PP SSDQELCIFDLLEEWAEPAALSS P+V+SPP            PPAPNFRVPPSPFRTLNTEIPP
Subjt:  ILSPTPTSLPPLFSPDAFTSSPSP----PTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPP------------PPAPNFRVPPSPFRTLNTEIPP

Query:  SFNTPLPPLFFPPNHFPHNN
        SFNTPLPPLFFPPNHFPHNN
Subjt:  SFNTPLPPLFFPPNHFPHNN

TrEMBL top hitse value%identityAlignment
A0A0A0KCP3 Uncharacterized protein1.1e-3051.53Show/hide
Query:  SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTS
        S P RE GRK+VLQIS DSQ IKKPPL       +PVIRY+Y+ D +II VKT  DF YIVQLLTGDPN PPP +PC C       Q R    LSP P  
Subjt:  SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTS

Query:  LPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHNN
                         TPPP       L ++ LL     P +L        PPP APNF+VPPSPFRTLNTEIPP FN+   P F+PPNHFP NN
Subjt:  LPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHNN

A0A5A7UXK4 Uncharacterized protein1.6e-3754.98Show/hide
Query:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDD-----PQPQARPQ
        MSSS   P+  +G K +LQISN+S+ IKKPPLP K A   PV++YE +  RII V+TP DF YIVQLLTGDPNRPPP +PC CD  D      QP   PQ
Subjt:  MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDD-----PQPQARPQ

Query:  GILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEW-AEPAALS-SNPIVN-----SPPP-----PAPNFRVPPSPFRTLNTEIPPSFN
        GILSP PTSL PL SP  FT        P P S DQ+   FDLL+E   EP  LS S P++N     SPPP     P P FRV PS +    TEIPPSF 
Subjt:  GILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEW-AEPAALS-SNPIVN-----SPPP-----PAPNFRVPPSPFRTLNTEIPPSFN

Query:  TPLPPLFFPPN
        T  PP+FFPPN
Subjt:  TPLPPLFFPPN

A0A5D3DJD1 Uncharacterized protein2.8e-0534.76Show/hide
Query:  QKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIV-QLLTGDPNRPP-PKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSSPSPPT
        +K+K+ P PP+             K + I+V+ P    Y+V Q LTG  +    P H  +   DD + Q  P GILSPTP SLPP+ SP+AFTS+     
Subjt:  QKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIV-QLLTGDPNRPP-PKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSSPSPPT

Query:  PPPPPSSDQELCIFDLLEEWAEPA-ALSSNPIVNSPPPPAPNFR---------------VPPSPFRTLNTEIPPSFNTPLPPLFFPP
            PSS++EL I+D    W E A      PI+ S      N+                V P P   ++  +PP F TPLPPL++ P
Subjt:  PPPPPSSDQELCIFDLLEEWAEPA-ALSSNPIVNSPPPPAPNFR---------------VPPSPFRTLNTEIPPSFNTPLPPLFFPP

A0A6J1CL52 protein MKS1-like4.3e-0634Show/hide
Query:  RKEVLQISNDSQKIKKPPLPPKTA----------ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTG-DPNRPPPKHPCTCDDDDPQPQARPQ---GILS
        R   L ++ DS KIKKPPLPP  A           + P++ YE      +K    ADF   VQ  TG  P+        + D  +P+P   P    GILS
Subjt:  RKEVLQISNDSQKIKKPPLPPKTA----------ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTG-DPNRPPPKHPCTCDDDDPQPQARPQ---GILS

Query:  PTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHN
        PTPTSLP + SP+ FT +   PTPPPPP  D     +  +E                 PPP P F   P         +P       P  FF  N FP N
Subjt:  PTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHN

A0A6J1H6R4 extensin-like4.1e-0944.35Show/hide
Query:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPK-------HPCTCDDDDPQPQARPQGILSPTP
        E+  ++ LQIS  S+ IKKPPLPP +A  R  +I+Y+  K +II VKTPA+F YIVQLLTG PN PPP         P T     PQP    + +L+P P
Subjt:  EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPK-------HPCTCDDDDPQPQARPQGILSPTP

Query:  TSLPPLFSPDAFTSSPSPPTPPPP
             ++  D     PS P P PP
Subjt:  TSLPPLFSPDAFTSSPSPPTPPPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein6.7e-0433.33Show/hide
Query:  PNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPF
        P  PPP  P       P P   P  + SP P S PP   P     SP PP PPPPP          +      P + +  P+  + PPP P    PP  F
Subjt:  PNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPF

Query:  RTLNTEIPPSFNTPLPPLFFPPNHFP
             E P  +++P PP   PP H P
Subjt:  RTLNTEIPPSFNTPLPPLFFPPNHFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAACGATTCCCAAAAGATCAAGAAGCCGCCATTGCCGCCGAAAACGGC
GGCGCGGTCGCCGGTCATAAGGTACGAGTACCAGAAGGACCGGATCATTAAAGTAAAAACCCCTGCAGACTTCGCCTACATCGTCCAACTCCTCACCGGCGACCCCAATC
GTCCGCCACCCAAACACCCCTGTACTTGTGACGACGACGATCCTCAGCCGCAGGCCCGCCCACAAGGGATTCTGTCCCCGACTCCCACTTCTCTTCCCCCACTTTTTTCT
CCCGATGCTTTTACTTCGTCGCCGTCTCCTCCTACGCCGCCACCGCCGCCTTCGTCTGACCAAGAACTCTGCATTTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGC
ATTATCATCAAACCCTATTGTTAATTCACCACCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCCAGTTTCAACA
CTCCTCTGCCTCCTCTGTTCTTCCCACCCAATCATTTTCCCCACAACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAACGATTCCCAAAAGATCAAGAAGCCGCCATTGCCGCCGAAAACGGC
GGCGCGGTCGCCGGTCATAAGGTACGAGTACCAGAAGGACCGGATCATTAAAGTAAAAACCCCTGCAGACTTCGCCTACATCGTCCAACTCCTCACCGGCGACCCCAATC
GTCCGCCACCCAAACACCCCTGTACTTGTGACGACGACGATCCTCAGCCGCAGGCCCGCCCACAAGGGATTCTGTCCCCGACTCCCACTTCTCTTCCCCCACTTTTTTCT
CCCGATGCTTTTACTTCGTCGCCGTCTCCTCCTACGCCGCCACCGCCGCCTTCGTCTGACCAAGAACTCTGCATTTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGC
ATTATCATCAAACCCTATTGTTAATTCACCACCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCCAGTTTCAACA
CTCCTCTGCCTCCTCTGTTCTTCCCACCCAATCATTTTCCCCACAACAATTAA
Protein sequenceShow/hide protein sequence
MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFS
PDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHNN