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ClCG08G009300 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G009300
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr08:21892114..21893798
RNA-Seq ExpressionClCG08G009300
SyntenyClCG08G009300
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW27472.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.1e-1247.13Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W++R+  WVAL A G+S  ILIIW  +N+   + + G
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

RVW62762.1 hypothetical protein CK203_060223 [Vitis vinifera]1.9e-1246.24Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKGLNSAGS
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W+ R+  WVAL A G+S  ILIIW  +N+   + + G  S+ S
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKGLNSAGS

RVX11533.1 hypothetical protein CK203_015752 [Vitis vinifera]1.9e-1247.13Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W +R+  WVAL A G+S  ILIIW  +N+   + + G
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

TYK11577.1 hypothetical protein E5676_scaffold263G00140 [Cucumis melo var. makuwa]1.5e-1249.35Show/hide
Query:  GLNACLKRALVKDLLVKFNPDVIL-QESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIK
        GL A  KRAL+KDL+VKFN +V++  E+K  +++RR +K +W +R  GWVAL+AI  S+ ILI+WKE++I ++D ++
Subjt:  GLNACLKRALVKDLLVKFNPDVIL-QESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIK

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]1.9e-1558.97Show/hide
Query:  GLNACLKRALVKDLLVKFNPD-VILQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        G+     +A+VK+LLVKFNPD VILQ+SK+  V+R +VKS+WSS  VGW  L A GSS  ILI+WKE++I VVD+I+G
Subjt:  GLNACLKRALVKDLLVKFNPD-VILQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

TrEMBL top hitse value%identityAlignment
A0A2N9J9W3 Reverse transcriptase domain-containing protein7.2e-1345.88Show/hide
Query:  VLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        +LSWN RGLN   KR +VK+LL  +  DV+ LQE+KLD +D  +V+SLWS+ +VGW  +NA+ ++  IL++W +  +  +D+I G
Subjt:  VLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

A0A438CWA7 Transposon TX1 uncharacterized 149 kDa protein5.5e-1347.13Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W++R+  WVAL A G+S  ILIIW  +N+   + + G
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

A0A438FS30 Uncharacterized protein9.4e-1346.24Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKGLNSAGS
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W+ R+  WVAL A G+S  ILIIW  +N+   + + G  S+ S
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKGLNSAGS

A0A438JRF7 Endo/exonuclease/phosphatase domain-containing protein9.4e-1347.13Show/hide
Query:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG
        M ++SWN RGL +  KR +VKD L   NPDV+ +QE+K +  DRR V S+W +R+  WVAL A G+S  ILIIW  +N+   + + G
Subjt:  MLVLSWNARGLNACLKRALVKDLLVKFNPDVI-LQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKG

A0A5D3CI31 Reverse transcriptase domain-containing protein7.2e-1349.35Show/hide
Query:  GLNACLKRALVKDLLVKFNPDVIL-QESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIK
        GL A  KRAL+KDL+VKFN +V++  E+K  +++RR +K +W +R  GWVAL+AI  S+ ILI+WKE++I ++D ++
Subjt:  GLNACLKRALVKDLLVKFNPDVIL-QESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTCCTCTCATGGAATGCAAGGGGTCTTAATGCTTGCCTCAAAAGAGCTTTGGTGAAGGATCTATTGGTGAAATTCAATCCAGATGTTATTCTTCAAGAG
TCTAAACTTGATGAGGTTGATCGTCGTATAGTGAAGTCCCTCTGGAGCAGTCGCCATGTTGGTTGGGTGGCCCTAAACGCCATCGGTTCTTCTAGTAGCATTCTG
ATTATTTGGAAGGAGGAAAATATCATTGTGGTTGACACAATCAAAGGACTCAACTCCGCAGGGAGTTTTGCCAACCCTAAGGACAGGAAGCAGACCGACTGCTTC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTCCTCTCATGGAATGCAAGGGGTCTTAATGCTTGCCTCAAAAGAGCTTTGGTGAAGGATCTATTGGTGAAATTCAATCCAGATGTTATTCTTCAAGAG
TCTAAACTTGATGAGGTTGATCGTCGTATAGTGAAGTCCCTCTGGAGCAGTCGCCATGTTGGTTGGGTGGCCCTAAACGCCATCGGTTCTTCTAGTAGCATTCTG
ATTATTTGGAAGGAGGAAAATATCATTGTGGTTGACACAATCAAAGGACTCAACTCCGCAGGGAGTTTTGCCAACCCTAAGGACAGGAAGCAGACCGACTGCTTC
TAA
Protein sequenceShow/hide protein sequence
MLVLSWNARGLNACLKRALVKDLLVKFNPDVILQESKLDEVDRRIVKSLWSSRHVGWVALNAIGSSSSILIIWKEENIIVVDTIKGLNSAGSFANPKDRKQTDCF