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ClCG08G013530 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G013530
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA ligase
Genome locationCG_Chr08:26331026..26331424
RNA-Seq ExpressionClCG08G013530
SyntenyClCG08G013530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]3.3e-3369.03Show/hide
Query:  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-P
        SFCCFH      PS    T+PCSW KSTA ELS LL RCRY LAR+ARRR  YLAS DFSYDSSSYALNF++DCRDD +FP RDFTARFPP +KDRLP  
Subjt:  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-P

Query:  PKFAASQDGNPIS
         KFA S    PIS
Subjt:  PKFAASQDGNPIS

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]2.0e-2758.65Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPL
        ML  FHHS S  H LKSS  CF      +  + ST +PCSWFKSTAAE  +LL RCRYL+ARI R  R++Y AS DF+YDSSSYALNFE+D R D EFPL
Subjt:  MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPL

Query:  RDFTARFPPAVKDRLPPPKFAASQDG-NPISAC
        R+F AR P     RLP  KFA SQ G + ++AC
Subjt:  RDFTARFPPAVKDRLPPPKFAASQDG-NPISAC

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]1.2e-4370.54Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE
        MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RCRYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D E
Subjt:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE

Query:  FPLRDFTARFPPAVKDRLPPPKFAASQDG
        FP R+FTARFPP +K+R+P  KFA S+DG
Subjt:  FPLRDFTARFPPAVKDRLPPPKFAASQDG

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]2.7e-4369.77Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE
        MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RCRYLLARIARRRK+YLAS+DF+YDSSSYALNF++DCR+D E
Subjt:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE

Query:  FPLRDFTARFPPAVKDRLPPPKFAASQDG
        FP RDFTARFPP +K+R P  KFA S+DG
Subjt:  FPLRDFTARFPPAVKDRLPPPKFAASQDG

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]2.4e-4471.32Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE
        MLPHFHHSP+    LKSSFCCFH      FL SPSK+ TT+PCSWFKST  E   +L RCRYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D E
Subjt:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE

Query:  FPLRDFTARFPPAVKDRLPPPKFAASQDG
        FP R+FTARFPP +K+R+P  KFA S+DG
Subjt:  FPLRDFTARFPPAVKDRLPPPKFAASQDG

TrEMBL top hitse value%identityAlignment
A0A1S3BDX7 uncharacterized protein LOC1034885651.6e-3369.03Show/hide
Query:  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-P
        SFCCFH      PS    T+PCSW KSTA ELS LL RCRY LAR+ARRR  YLAS DFSYDSSSYALNF++DCRDD +FP RDFTARFPP +KDRLP  
Subjt:  SFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAVKDRLP-P

Query:  PKFAASQDGNPIS
         KFA S    PIS
Subjt:  PKFAASQDGNPIS

A0A6J1BQU1 uncharacterized protein LOC1110047689.9e-2858.65Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPL
        ML  FHHS S  H LKSS  CF      +  + ST +PCSWFKSTAAE  +LL RCRYL+ARI R  R++Y AS DF+YDSSSYALNFE+D R D EFPL
Subjt:  MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIAR-RRKKYLASLDFSYDSSSYALNFENDCRDDREFPL

Query:  RDFTARFPPAVKDRLPPPKFAASQDG-NPISAC
        R+F AR P     RLP  KFA SQ G + ++AC
Subjt:  RDFTARFPPAVKDRLPPPKFAASQDG-NPISAC

A0A6J1FP70 uncharacterized protein LOC1114460222.5e-1548.39Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCF---HTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFEND-CRDDRE
        M+ + +H  S    LKSS  CF   H  FL +   +S   P S  KS AAE  EL   CR L+ARI R R++Y  S DF YD SSYALNFE++  RDD E
Subjt:  MLPHFHHSPSSPHNLKSSFCCF---HTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFEND-CRDDRE

Query:  FPLRDFTARFP--PAVKDRLPPPK
        FP+RDF +R P  P    RL P K
Subjt:  FPLRDFTARFP--PAVKDRLPPPK

A0A6J1HE78 uncharacterized protein LOC1114627415.8e-4470.54Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE
        MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RCRYLLARIARRRK+YLAS+DFSYDSSSYALNFE+DCR+D E
Subjt:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE

Query:  FPLRDFTARFPPAVKDRLPPPKFAASQDG
        FP R+FTARFPP +K+R+P  KFA S+DG
Subjt:  FPLRDFTARFPPAVKDRLPPPKFAASQDG

A0A6J1K7R1 uncharacterized protein LOC1114924241.3e-4369.77Show/hide
Query:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE
        MLPHFHHSP+    LKSSFCCFH      FL SPSK+ T +PCSWFKST  E   +L RCRYLLARIARRRK+YLAS+DF+YDSSSYALNF++DCR+D E
Subjt:  MLPHFHHSPSSPHNLKSSFCCFH----THFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDRE

Query:  FPLRDFTARFPPAVKDRLPPPKFAASQDG
        FP RDFTARFPP +K+R P  KFA S+DG
Subjt:  FPLRDFTARFPPAVKDRLPPPKFAASQDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11070.1 unknown protein3.3e-0733.6Show/hide
Query:  HNLKSSFCCFHTHFLHSP-------SKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASL---------------DFSYDSSSYALNFEND
        H ++S  CC   + +  P        + +  +P  W KSTA EL EL  RCR + +RI    +    +                DFSYD  SYALNFE++
Subjt:  HNLKSSFCCFHTHFLHSP-------SKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASL---------------DFSYDSSSYALNFEND

Query:  CRDDREFPLRDFTARFP--PAVKDR
         R D +    +FTAR P  P  K R
Subjt:  CRDDREFPLRDFTARFP--PAVKDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACCCCATTTTCATCACTCTCCTTCTTCCCCTCACAACCTCAAATCCTCCTTCTGCTGTTTCCACACCCATTTTCTCCACTCTCCTTCCAAGGCGTCCACAACAGC
CCCGTGTTCTTGGTTCAAATCCACCGCCGCTGAACTGTCGGAGTTACTTCACCGCTGCCGGTATCTCCTAGCTCGGATAGCTCGCCGCCGGAAGAAGTACCTTGCCTCCC
TCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGAACGACTGCCGTGACGACCGTGAGTTTCCCTTAAGAGATTTCACTGCTAGATTCCCCCCGGCCGTC
AAGGACCGTCTTCCCCCTCCCAAATTCGCCGCTTCTCAAGATGGAAACCCCATCTCCGCCTGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACCCCATTTTCATCACTCTCCTTCTTCCCCTCACAACCTCAAATCCTCCTTCTGCTGTTTCCACACCCATTTTCTCCACTCTCCTTCCAAGGCGTCCACAACAGC
CCCGTGTTCTTGGTTCAAATCCACCGCCGCTGAACTGTCGGAGTTACTTCACCGCTGCCGGTATCTCCTAGCTCGGATAGCTCGCCGCCGGAAGAAGTACCTTGCCTCCC
TCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGAACGACTGCCGTGACGACCGTGAGTTTCCCTTAAGAGATTTCACTGCTAGATTCCCCCCGGCCGTC
AAGGACCGTCTTCCCCCTCCCAAATTCGCCGCTTCTCAAGATGGAAACCCCATCTCCGCCTGTGGTTGA
Protein sequenceShow/hide protein sequence
MLPHFHHSPSSPHNLKSSFCCFHTHFLHSPSKASTTAPCSWFKSTAAELSELLHRCRYLLARIARRRKKYLASLDFSYDSSSYALNFENDCRDDREFPLRDFTARFPPAV
KDRLPPPKFAASQDGNPISACG