CuGenDBv2

Gene ID	ClCG08G017910
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome location	CG_Chr08:29950272..29950991
RNA-Seq Expression	ClCG08G017910
Synteny	ClCG08G017910
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016020 - membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

CDY25312.1 BnaC01g29810D [Brassica napus]

3.9e-25

68.42

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSE------GLLPCYGDVNAFIVI--IIIIIFCIS-DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWD YLDLLQADY+E      G   CY   ++ + I  +I I  C+  DALDA+GLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSE------GLLPCYGDVNAFIVI--IIIIIFCIS-DALDALGLVRYCCRRMLMTHVDLIEKLLNYN

KAA0057130.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa]

3.0e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

KAG6598222.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]

3.0e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

XP_022961651.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata]

3.0e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPW4 Uncharacterized protein

1.4e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

A0A5A7UPU3 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.4e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.4e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

A0A6J1KEH3 DNA-directed RNA polymerase subunit 10-like protein

1.4e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.4e-25

72.09

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWDHYLDLLQADYSEG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.9e-22

61.18

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EG                       DALDALGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.4e-25

67.44

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWD YLDLLQ DY+EG                       DALDAL LVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5

1.4e-22

63.53

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGK+IGNKWD YL LLQ DY+EG                       DALDAL L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

2.4e-25

67.44

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWD YLDLLQ DY+EG                       DALDAL LVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

4.8e-26

67.44

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MI+PVRCFTCGK+IGNKWD YL+LLQADY+EG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

1.7e-26

67.44

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MIIPVRCFTCGK+IGNKWD YLDLLQ DY+EG                       DALDAL LVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

AT1G61700.1 RNA polymerases N / 8 kDa subunit

3.4e-27

67.44

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Query:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        MI+PVRCFTCGK+IGNKWD YL+LLQADY+EG                       DALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

Sequences

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CDS sequence

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ATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGATGATTGGAAACAAGTGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCAGAAGGACTTTTACCTTGCTA
TGGAGATGTTAATGCTTTTATTGTTATTATTATTATTATTATTTTCTGTATTAGTGATGCACTTGATGCGCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGA
CTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATCGGCGTTTACTTAAGAGAAAACAAAAACTATGGAAAGACCCGAGCTATGTGTTGGTGTCCC
GGTTTGTTTATTTGTTGTTTTACAAGAACCTAA

mRNA sequence

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AAACCTTGAAGGTCAAGTTGAAATTGCGTGGGTTGTTCATAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGAAAGATGATTGGAAACAAGTGGGATCATT
ACCTTGATCTTCTACAGGCAGACTATTCAGAAGGACTTTTACCTTGCTATGGAGATGTTAATGCTTTTATTGTTATTATTATTATTATTATTTTCTGTATTAGTGATGCA
CTTGATGCGCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATAGAGTCAGCATCGGCGTTTACTT
AAGAGAAAACAAAAACTATGGAAAGACCCGAGCTATGTGTTGGTGTCCCGGTTTGTTTATTTGTTGTTTTACAAGAACCTAA

Protein sequence

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MIIPVRCFTCGKMIGNKWDHYLDLLQADYSEGLLPCYGDVNAFIVIIIIIIFCISDALDALGLVRYCCRRMLMTHVDLIEKLLNYNRVSIGVYLRENKNYGKTRAMCWCP
GLFICCFTRT

ClCG08G017910 (gene) of Watermelon (Charleston Gray) v2.5 genome