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ClCG08G018060 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG08G018060
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationCG_Chr08:30071631..30072481
RNA-Seq ExpressionClCG08G018060
SyntenyClCG08G018060
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029191.1 hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-3688.35Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSARTLL RSSS   SASH VSKPTMSA LPSAKP ASSRFSV KLTNFRLPVELSS+QSLMPLHS TASALFTSLLSLHNNSWGC
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC

Query:  LSE
        LSE
Subjt:  LSE

XP_004145570.1 uncharacterized protein LOC101210124 [Cucumis sativus]4.6e-3682.69Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC SWKT+ ISSSSAR LLHRSSS  SASHFVS PTMS GLPSAKPPASSRFSV +LTNFRLPVEL+S+QSLMPL SVTAS LFTSLLS HNNSWGCL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SEVL
        S+ +
Subjt:  SEVL

XP_022961783.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata]4.6e-3688.35Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSARTLL RSSS   SASH VSKPTMSA LPSAKP ASSRFSV KLTNFRLPVELSS+QSLMPLHS TASALFTSLLSLHNNSWGC
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC

Query:  LSE
        LSE
Subjt:  LSE

XP_022996536.1 uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima]1.4e-3787.5Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC +WKTLRISSSSARTLL RSSS  SASH VSKPTMSA LPSAKP ASSRFSV KLTNFRLPVELSS+QSLMPLHS TASALFTSLLSLHNNSWGCL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SEVL
        SE +
Subjt:  SEVL

XP_038885251.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]1.8e-4094.12Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC SWKTLRISSSSARTLLHRSSS  SASHFVSKPTMSAGLPSAKPPASSRF VQKLTNFRLPVELSS+QSLMPLHSVTASALFTSLLSLHNNSWG L
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SE
        SE
Subjt:  SE

TrEMBL top hitse value%identityAlignment
A0A0A0L605 Radical_SAM domain-containing protein2.2e-3682.69Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC SWKT+ ISSSSAR LLHRSSS  SASHFVS PTMS GLPSAKPPASSRFSV +LTNFRLPVEL+S+QSLMPL SVTAS LFTSLLS HNNSWGCL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SEVL
        S+ +
Subjt:  SEVL

A0A5D3D8K9 Dual-specificity RNA methyltransferase RlmN isoform X12.8e-3177.88Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC SWKT+ ISSSSAR LLHR SS  SASHFVS PTMS GL SA+P ASSRFSVQ+LTNF LPVEL+S+QSLMPL SVTASALFTSLLS HNNS  CL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SEVL
        S+ +
Subjt:  SEVL

A0A6J1E309 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial4.9e-3684.31Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC +WKTLR+SSSS RTL+ RSSS +SASHFVS+PT   GLPSAKP AS RFSVQKLTN RLPVELSS+QSLMPLHSVTASALFTSLLSLHNNSWGCL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SE
        SE
Subjt:  SE

A0A6J1HCT7 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial2.2e-3688.35Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSARTLL RSSS   SASH VSKPTMSA LPSAKP ASSRFSV KLTNFRLPVELSS+QSLMPLHS TASALFTSLLSLHNNSWGC
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSF-TSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGC

Query:  LSE
        LSE
Subjt:  LSE

A0A6J1K524 uncharacterized protein LOC111491756 isoform X26.9e-3887.5Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAAC +WKTLRISSSSARTLL RSSS  SASH VSKPTMSA LPSAKP ASSRFSV KLTNFRLPVELSS+QSLMPLHS TASALFTSLLSLHNNSWGCL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SEVL
        SE +
Subjt:  SEVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein1.7e-0435.56Show/hide
Query:  SSARTLLHRSSSFTSASHFVSKPTMS-AGLPSAKPPASSRFSVQKLT-NFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +S+  +   SS   S +  +SK  +  + LPS    +S   +  ++  +FRLPVELS   S++PLHS  ASA   S LS+ + SWG + +
Subjt:  SSARTLLHRSSSFTSASHFVSKPTMS-AGLPSAKPPASSRFSVQKLT-NFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCLSE

AT1G55205.2 unknown protein2.0e-0535.71Show/hide
Query:  SSARTLLHRSSSFTSASHFVSKPTMS-AGLPSAKPPASSRFSVQKLT-NFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCLSEVLRFSKLF
        +S+  +   SS   S +  +SK  +  + LPS    +S   +  ++  +FRLPVELS   S++PLHS  ASA   S LS+ + SWG + +   FS L+
Subjt:  SSARTLLHRSSSFTSASHFVSKPTMS-AGLPSAKPPASSRFSVQKLT-NFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCLSEVLRFSKLF

AT1G70350.1 unknown protein5.2e-1451.96Show/hide
Query:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL
        MAA    + L+ SSSS + L  RSS+ TSAS       ++ G  S+   +S+R S+++LT  R+PVELS+  SL+PLHSVTASAL TSLLSL N +W CL
Subjt:  MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCL

Query:  SE
        SE
Subjt:  SE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTTGCTATTCCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCTAGAACTCTCCTCCACCGTTCCTCCTCCTTTACCTCTGCATCTCATTTTGTGTCCAAACC
TACTATGTCTGCCGGACTTCCTTCCGCAAAGCCGCCCGCATCTTCCCGCTTCTCTGTTCAGAAGCTTACCAACTTCAGGCTTCCAGTGGAGTTATCAAGCTTGCAGTCTC
TAATGCCATTGCACAGTGTTACTGCTTCTGCGTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGTTTTACGATTCTCCAAGTTATTT
GCAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTTGCTATTCCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCTAGAACTCTCCTCCACCGTTCCTCCTCCTTTACCTCTGCATCTCATTTTGTGTCCAAACC
TACTATGTCTGCCGGACTTCCTTCCGCAAAGCCGCCCGCATCTTCCCGCTTCTCTGTTCAGAAGCTTACCAACTTCAGGCTTCCAGTGGAGTTATCAAGCTTGCAGTCTC
TAATGCCATTGCACAGTGTTACTGCTTCTGCGTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGTTTTACGATTCTCCAAGTTATTT
GCAATCTGA
Protein sequenceShow/hide protein sequence
MAACYSWKTLRISSSSARTLLHRSSSFTSASHFVSKPTMSAGLPSAKPPASSRFSVQKLTNFRLPVELSSLQSLMPLHSVTASALFTSLLSLHNNSWGCLSEVLRFSKLF
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