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ClCG09G005230 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G005230
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationCG_Chr09:4628157..4630529
RNA-Seq ExpressionClCG09G005230
SyntenyClCG09G005230
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]4.0e-6193.66Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]4.0e-6193.66Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]4.7e-6293.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]5.2e-6192.31Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]4.7e-6293.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYL+RKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ

TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 131.9e-6193.66Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID

A0A5A7TZC2 Transcription initiation factor TFIID subunit 131.9e-6193.66Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 131.9e-6193.66Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKID

A0A6J1CTQ0 transcription initiation factor TFIID subunit 132.3e-6293.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 132.5e-6192.31Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITEL       VYKAQEIGSKRGKLSVEDFLYLMRKD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKD

Query:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ
        PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  PRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 136.5e-2255.45Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+        +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF

Query:  E
        +
Subjt:  E

Q148M7 Transcription initiation factor TFIID subunit 136.5e-2255.45Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+        +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF

Query:  E
        +
Subjt:  E

Q15543 Transcription initiation factor TFIID subunit 136.5e-2255.45Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+        +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF

Query:  E
        +
Subjt:  E

Q5R9W6 Transcription initiation factor TFIID subunit 136.5e-2255.45Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+        +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAF

Query:  E
        +
Subjt:  E

Q6NQH4 Transcription initiation factor TFIID subunit 131.5e-3461.65Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMR
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L        +KAQEIGSKRG+L V+DFLYL+R
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMR

Query:  KDPRKLNRSTELLSMNEELKQARRAFEIDEDKL
        KD  KLNR  ELL+M EELKQAR+AF++DE +L
Subjt:  KDPRKLNRSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 131.1e-3561.65Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMR
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L        +KAQEIGSKRG+L V+DFLYL+R
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMR

Query:  KDPRKLNRSTELLSMNEELKQARRAFEIDEDKL
        KD  KLNR  ELL+M EELKQAR+AF++DE +L
Subjt:  KDPRKLNRSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCA
TATGATGTATGGTTTTGGAGATGATCCTAACCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATCACTGAATTGGTTAAGAGTTTCTGTGCAA
TTGTGTATAAAGCCCAGGAAATTGGATCGAAGAGGGGAAAACTATCAGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAGCTGAACCGCTCTACTGAACTG
TTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATAGATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATCGTCCTTTCTTTCTAATCAGACCCATTTGCGGAAGAATATTGTAAGCTCCGGCGAACCTCCTGCGGTGACTCCGATTCTCCATCTCCGGTTATTTTCGTCTTGATTAT
TGTGGGAAGTTAGCGAAGATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTT
TCAGAAAGAATTGCAGCATATGATGTATGGTTTTGGAGATGATCCTAACCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATCACTGAATTGG
TTAAGAGTTTCTGTGCAATTGTGTATAAAGCCCAGGAAATTGGATCGAAGAGGGGAAAACTATCAGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAGCTG
AACCGCTCTACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGAT
AGATCAGTAATCATAGGAAGAAGATATTTTGGAGGTCATTTGTTGCTGCACAGACAAAGTTCGTCTCATTATAGTGTCTTGTCATATTAAAAGTCAACCGACAGGGCTTT
GAACTCTGTCTTTGTCAACCTTTTTCTGTAGCCTAAAGGCTCCATGGTAGACAGGGCAAAATAAAGCAATTAGCTTTTAGCAAGGGTTATTTTGTTTTTTCTGCTTAATG
GAAACTAATGTACACTAATCCCCTTCCTCTTAGCCCTGACCTACTTATAAAGGTGGGGGCTTCCCTATTGTACACACACTCCTTTTGGAATTAATG
Protein sequenceShow/hide protein sequence
MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVKSFCAIVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTEL
LSMNEELKQARRAFEIDEDKLKKAFEEEDKIDQ