; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG09G010200 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G010200
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description40S ribosomal protein S18
Genome locationCG_Chr09:9976444..9982936
RNA-Seq ExpressionClCG09G010200
SyntenyClCG09G010200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:2000028 - regulation of photoperiodism, flowering (biological process)
GO:0005829 - cytosol (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046827.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]3.5e-6789.17Show/hide
Query:  GNSTNSL--------------LLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN
        GNS NSL              LLST  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN
Subjt:  GNSTNSL--------------LLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN

Query:  PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
        PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR

KAA0059528.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]6.1e-7297.24Show/hide
Query:  AAGNSTNSLLLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN
        AAGNS+N L LS+FAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN
Subjt:  AAGNSTNSLLLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN

Query:  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
        RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR

XP_002524340.1 40S ribosomal protein S18 [Ricinus communis]2.9e-6699.23Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

XP_004139687.1 40S ribosomal protein S18 [Cucumis sativus]2.2e-66100Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

XP_021902783.1 40S ribosomal protein S18 isoform X1 [Carica papaya]3.8e-6698.46Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKG+GRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z7 Uncharacterized protein1.1e-66100Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

A0A1S3CH47 40S ribosomal protein S181.1e-66100Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

A0A5A7UWI6 40S ribosomal protein S18 isoform X12.9e-7297.24Show/hide
Query:  AAGNSTNSLLLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN
        AAGNS+N L LS+FAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN
Subjt:  AAGNSTNSLLLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLN

Query:  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
        RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR

A0A5D3BZG0 40S ribosomal protein S18 isoform X11.7e-6789.17Show/hide
Query:  GNSTNSL--------------LLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN
        GNS NSL              LLST  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN
Subjt:  GNSTNSL--------------LLSTFAMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVAN

Query:  PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
        PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  PRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLR

B9SEC1 40S ribosomal protein S18, putative1.4e-6699.23Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

SwissProt top hitse value%identityAlignment
P34788 40S ribosomal protein S188.0e-6795.38Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

Q8ISP0 40S ribosomal protein S183.5e-5475.38Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        N+LD KLR+DLERLKKIR HRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

Q8IT98 40S ribosomal protein S181.7e-5373.85Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+S
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALD KLR+DLERLKKIR HRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

Q8JGS9 40S ribosomal protein S182.1e-5171.54Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        N LD KLR+DLERLKKIR HRGLRH+WGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

Q90YQ5 40S ribosomal protein S188.0e-5170.77Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        N LD KLR+DLERLKKIR HRGLRH+WGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family5.7e-6895.38Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

AT1G34030.1 Ribosomal protein S13/S18 family5.7e-6895.38Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR

AT4G09800.1 S18 ribosomal protein5.7e-6895.38Show/hide
Query:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR
        NALDMKLRDDLERLKKIRNHRGLRHYWGLR
Subjt:  NALDMKLRDDLERLKKIRNHRGLRHYWGLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCGGTCAATCATATGGCTATGGGGAACCTGGGATATCTTATTGTGTCCAATCCCTAAGCTAACCAAGGGCTTAGAGTCGGTTTATGGTGTCCACAAGTTTGTTGT
CACTCCGAAAAGCCCCACTGAAACCCTAGAATCTGAATTGACAATATATAAAATCCTTCTCCACTCTCCACCCAAAGATCTCCTCTGGTGTTTTCCTGCTTTTGCTGCCG
CCGGGAATTCTACGAACTCCTTGCTTCTATCTACATTCGCCATGTCGCTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACCAACGTGGATGGGAAG
CAGAAGATTATGTTTGCTCTCACTTCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAAC
TGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGGAAATATTCTC
AAGTAGTTTCGAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGACGGGTTAAG
CTAGAAAAGGAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCGGTCAATCATATGGCTATGGGGAACCTGGGATATCTTATTGTGTCCAATCCCTAAGCTAACCAAGGGCTTAGAGTCGGTTTATGGTGTCCACAAGTTTGTTGT
CACTCCGAAAAGCCCCACTGAAACCCTAGAATCTGAATTGACAATATATAAAATCCTTCTCCACTCTCCACCCAAAGATCTCCTCTGGTGTTTTCCTGCTTTTGCTGCCG
CCGGGAATTCTACGAACTCCTTGCTTCTATCTACATTCGCCATGTCGCTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACCAACGTGGATGGGAAG
CAGAAGATTATGTTTGCTCTCACTTCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAAC
TGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGGAAATATTCTC
AAGTAGTTTCGAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGACGGGTTAAG
CTAGAAAAGGAAGGTTGA
Protein sequenceShow/hide protein sequence
MKRSIIWLWGTWDILLCPIPKLTKGLESVYGVHKFVVTPKSPTETLESELTIYKILLHSPPKDLLWCFPAFAAAGNSTNSLLLSTFAMSLVANEDFQHILRVLNTNVDGK
QKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRRVK
LEKEG