CuGenDBv2

Gene ID	ClCG09G012340
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	CG_Chr09:14030014..14030542
RNA-Seq Expression	ClCG09G012340
Synteny	ClCG09G012340
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR036823 - Ribosomal protein S7 domain superfamily IPR036121 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily IPR023798 - Ribosomal protein S7 domain IPR023366 - ATP synthase subunit alpha, N-terminal domain-like superfamily IPR004100 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

DAD29483.1 TPA_asm: hypothetical protein HUJ06_030951 [Nelumbo nucifera]

6.1e-31

79.8

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKREVL--NGKSCSDT
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +   +  N  +CSDT
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKREVL--NGKSCSDT

PHU09444.1 Photosystem II protein D1 [Capsicum chinense]

1.4e-30

88.37

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGTIGI LNLESNNVGVVL+G GLLI +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

YP_009318069.1 ATP synthase CF1 alpha subunit [Corylus fargesii]

2.3e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

YP_009509914.1 ATP synthase CF1 alpha subunit [Corylus ferox var. thibetica]

2.3e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

YP_009967243.1 ATP synthase CF1 alpha subunit [Anthurium huixtlense]

3.0e-30

73.83

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKREVLNGK------SC
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA I+ LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R  +         S 
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKREVLNGK------SC

Query:  SDTSLGR
        S+  LGR
Subjt:  SDTSLGR

TrEMBL top hits

e value

%identity

Alignment

A0A1I9RFU2 ATP synthase subunit alpha, chloroplastic

1.1e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

A0A1I9RG22 ATP synthase subunit alpha, chloroplastic

1.1e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

A0A2G3BSI9 Photosystem II protein D1

6.6e-31

88.37

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIREHIEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGTIGI LNLESNNVGVVL+G GLLI +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

A0A345BAT7 ATP synthase subunit alpha, chloroplastic

1.1e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

A0A385KBW2 ATP synthase subunit alpha, chloroplastic

1.1e-30

87.21

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR
        MVTIRADEISNIIRE IEQY+REVK+VNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +R
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHKR

SwissProt top hits

e value

%identity

Alignment

A4GYP3 ATP synthase subunit alpha, chloroplastic

8.8e-33

88.24

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

B1NWD5 ATP synthase subunit alpha, chloroplastic

8.8e-33

88.24

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

Q14FH2 ATP synthase subunit alpha, chloroplastic

8.8e-33

88.24

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

Q49L13 ATP synthase subunit alpha, chloroplastic

8.8e-33

88.24

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

Q8S8Y3 ATP synthase subunit alpha, chloroplastic

2.0e-32

88.24

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REVKIVNTGTVLQVGDGIA I+ LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GLLI +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

1.4e-12

42.67

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Query:  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGG
        RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ LNLE+ NVG+V+ GG
Subjt:  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGG

ATCG00120.1 ATP synthase subunit alpha

3.1e-33

87.06

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Query:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK
        MVTIRADEISNIIRE IEQY+REV IVNTGTVLQVGDGIA IY LDEVM GELVEFEEGTIGI LNLESNNVGVVLMG GL+I +
Subjt:  MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMG-GLLIHK

ATCG00900.1 Ribosomal protein S7p/S5e family protein

5.9e-08

84.38

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Query:  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM
        GRNMAFKLS ELVD A  SGDAI KKEETHRM
Subjt:  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM

ATCG01240.1 ribosomal protein S7

5.9e-08

84.38

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Query:  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM
        GRNMAFKLS ELVD A  SGDAI KKEETHRM
Subjt:  GRNMAFKLSYELVDVANKSGDAIHKKEETHRM

ATMG01190.1 ATP synthase subunit 1

1.4e-12

42.67

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Query:  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGG
        RA E++N+    I  +    ++   G V+ VGDGIA +Y L+E+  GE+V F  G  G+ LNLE+ NVG+V+ GG
Subjt:  RADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGG

Sequences

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CDS sequence

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ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGTGAACATATTGAGCAATATGATAGAGAAGTCAAAATTGTGAATACTGGTACTGTACTTCAAGTA
GGTGATGGCATTGCTCATATTTATAGTCTTGATGAAGTAATGACAGGTGAATTAGTAGAATTTGAAGAGGGTACTATAGGCATAACTCTAAATTTAGAATCAAAT
AATGTTGGTGTTGTATTAATGGGTGGTTTGCTGATACACAAGAGGGAAGTTCTCAATGGGAAGAGTTGCTCAGATACCAGTCTGGGTCGAAATATGGCTTTCAAA
TTAAGTTATGAATTAGTGGATGTTGCCAACAAGAGTGGTGATGCCATACATAAAAAGGAGGAGACTCATAGAATGACACATAGGCCCATGGATCCATACATCTCG
ATCAGAAAAGAATCAATAGAAAAAGAAAGAATCAGAATTGATTGA

mRNA sequence

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Protein sequence

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MVTIRADEISNIIREHIEQYDREVKIVNTGTVLQVGDGIAHIYSLDEVMTGELVEFEEGTIGITLNLESNNVGVVLMGGLLIHKREVLNGKSCSDTSLGRNMAFK
LSYELVDVANKSGDAIHKKEETHRMTHRPMDPYISIRKESIEKERIRID

ClCG09G012340 (gene) of Watermelon (Charleston Gray) v2.5 genome