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ClCG09G012470 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G012470
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCG_Chr09:14394511..14410233
RNA-Seq ExpressionClCG09G012470
SyntenyClCG09G012470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049619.1 uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa]9.4e-0762Show/hide
Query:  VTRASIKAKGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKE
        VTRAS K KGK+ +   V  V LDGVSFH +E ASLWK++V++NIV+EKE
Subjt:  VTRASIKAKGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKE

KAA0066406.1 uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa]2.7e-0640.96Show/hide
Query:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN
        G++    NV +VP+DG+SFH EE    WK+V+QR I DE  +E   +  +     DF+DP+S+ +Q V I     V+S A+IN
Subjt:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN

TYK00879.1 uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa]2.7e-0640.96Show/hide
Query:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN
        G++    NV +VP+DG+SFH EE    WK+V+QR I DE  +E   +  +     DF+DP+S+ +Q V I     V+S A+IN
Subjt:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN

TYK07787.1 uncharacterized protein E5676_scaffold1737G00750 [Cucumis melo var. makuwa]4.7e-0640.96Show/hide
Query:  KGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMD-FDDPTSLKFQRVPIHHHPLVLSHAIIN
        KG++    N+SFVP+DG+ FH EE    WK+V+QR I DE       +  ++L D F++P+S  +Q V I     V+S A+IN
Subjt:  KGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMD-FDDPTSLKFQRVPIHHHPLVLSHAIIN

XP_038904458.1 uncharacterized protein LOC120090822 [Benincasa hispida]1.2e-0949.41Show/hide
Query:  NVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMDFDDPTSLKFQ-----------RVPIHHHPLVLSHAIIN
        NV FVPLDGVSFH EE ASLWKYVV+RNIV EKE  +  Q+C+  M+     SL+             RV I  H  V S  +IN
Subjt:  NVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMDFDDPTSLKFQ-----------RVPIHHHPLVLSHAIIN

TrEMBL top hitse value%identityAlignment
A0A5A7UAL1 Uncharacterized protein2.3e-0640.96Show/hide
Query:  KGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMD-FDDPTSLKFQRVPIHHHPLVLSHAIIN
        KG++    N+SFVP+DG+ FH EE    WK+V+QR I DE       +  ++L D F++P+S  +Q V I     V+S A+IN
Subjt:  KGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMD-FDDPTSLKFQRVPIHHHPLVLSHAIIN

A0A5A7VJ79 Uncharacterized protein1.3e-0640.96Show/hide
Query:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN
        G++    NV +VP+DG+SFH EE    WK+V+QR I DE  +E   +  +     DF+DP+S+ +Q V I     V+S A+IN
Subjt:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN

A0A5D3BS10 Uncharacterized protein1.3e-0640.96Show/hide
Query:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN
        G++    NV +VP+DG+SFH EE    WK+V+QR I DE  +E   +  +     DF+DP+S+ +Q V I     V+S A+IN
Subjt:  GKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN

A0A5D3D0J7 Uncharacterized protein4.6e-0762Show/hide
Query:  VTRASIKAKGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKE
        VTRAS K KGK+ +   V  V LDGVSFH +E ASLWK++V++NIV+EKE
Subjt:  VTRASIKAKGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKE

A0A5D3D6Q4 Uncharacterized protein2.3e-0644.74Show/hide
Query:  NVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN
        NV FVP+DG+SFH EE    WK+V+QR I DE  KE   +  +     +F+DP+S  +Q V I     V+S A+IN
Subjt:  NVSFVPLDGVSFHIEEGASLWKYVVQRNIVDE--KEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGACCTGGTTGAAACCAGAGTAGAAATTTACCTAACTAAGGATAAATCTACTTCTAGTGACTCTTTGAGTTCCATGCATGACTATATTGCATTACTTAGA
AACCCTAAAGAAGAAGTTAGGGTTCCTGAAAGTGGAATAAGCACCGATGATAATCCAGTCCTTGACTCTGTCAATGATGATTTCGTTTTGCCTGAATCCCATGAG
ACTTTAGATAGAAAAAGTGTGAATGATTCTGCTGAAATCAAAACGAAAAATGCTTTGATAATTGATGAAACTGCTTTACATGAGTTAGTTGAACATGTTGCTTCT
ATATCTACTGTACCTGTGTCTGTCACTTCCAAAAAGATTGTTGAGTTTGTTGAAGGAAGTGTTATTTTTGAATCTATGCCACTTGTTAAGAAGAGTGTCGATGCT
CCTCTTGATCCTTTATCCATGCCATCACGAGGGTTTGTGCATGATATCCCTGAGGAAGTTCCTCCTTCTGCCGATATCGTTGAAGAAGAAACTGAGGCTCGTGGT
GAGCCTCCATCCAAGAGAAATGAGGAAACTGAAGTAGACGTAGAGGTTGATGTTAATACTTCCTTGAGACATCCGAAAATGCGACGAAACAGTCTCCATCTAAGG
AAGACTTTAACTGGGGTGTGTGTCACTCGTGCATCAATTAAAGCAAAAGGAAAGCAAACGACTAGTGGGAATGTTTCCTTTGTACCACTAGATGGGGTATCTTTT
CATATAGAGGAGGGAGCTAGTTTATGGAAGTATGTTGTGCAGAGAAATATTGTTGATGAAAAGGAGCAGTTTGAAAGTGCTCAGGAATGTCTTGACCTCATGGAT
TTTGATGATCCTACGAGTCTTAAATTTCAGAGAGTTCCTATCCATCATCATCCACTTGTCTTGTCTCACGCCATTATCAACTATAAGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGACCTGGTTGAAACCAGAGTAGAAATTTACCTAACTAAGGATAAATCTACTTCTAGTGACTCTTTGAGTTCCATGCATGACTATATTGCATTACTTAGA
AACCCTAAAGAAGAAGTTAGGGTTCCTGAAAGTGGAATAAGCACCGATGATAATCCAGTCCTTGACTCTGTCAATGATGATTTCGTTTTGCCTGAATCCCATGAG
ACTTTAGATAGAAAAAGTGTGAATGATTCTGCTGAAATCAAAACGAAAAATGCTTTGATAATTGATGAAACTGCTTTACATGAGTTAGTTGAACATGTTGCTTCT
ATATCTACTGTACCTGTGTCTGTCACTTCCAAAAAGATTGTTGAGTTTGTTGAAGGAAGTGTTATTTTTGAATCTATGCCACTTGTTAAGAAGAGTGTCGATGCT
CCTCTTGATCCTTTATCCATGCCATCACGAGGGTTTGTGCATGATATCCCTGAGGAAGTTCCTCCTTCTGCCGATATCGTTGAAGAAGAAACTGAGGCTCGTGGT
GAGCCTCCATCCAAGAGAAATGAGGAAACTGAAGTAGACGTAGAGGTTGATGTTAATACTTCCTTGAGACATCCGAAAATGCGACGAAACAGTCTCCATCTAAGG
AAGACTTTAACTGGGGTGTGTGTCACTCGTGCATCAATTAAAGCAAAAGGAAAGCAAACGACTAGTGGGAATGTTTCCTTTGTACCACTAGATGGGGTATCTTTT
CATATAGAGGAGGGAGCTAGTTTATGGAAGTATGTTGTGCAGAGAAATATTGTTGATGAAAAGGAGCAGTTTGAAAGTGCTCAGGAATGTCTTGACCTCATGGAT
TTTGATGATCCTACGAGTCTTAAATTTCAGAGAGTTCCTATCCATCATCATCCACTTGTCTTGTCTCACGCCATTATCAACTATAAGTATTGA
Protein sequenceShow/hide protein sequence
MTDLVETRVEIYLTKDKSTSSDSLSSMHDYIALLRNPKEEVRVPESGISTDDNPVLDSVNDDFVLPESHETLDRKSVNDSAEIKTKNALIIDETALHELVEHVAS
ISTVPVSVTSKKIVEFVEGSVIFESMPLVKKSVDAPLDPLSMPSRGFVHDIPEEVPPSADIVEEETEARGEPPSKRNEETEVDVEVDVNTSLRHPKMRRNSLHLR
KTLTGVCVTRASIKAKGKQTTSGNVSFVPLDGVSFHIEEGASLWKYVVQRNIVDEKEQFESAQECLDLMDFDDPTSLKFQRVPIHHHPLVLSHAIINYKY