; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG09G013036 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G013036
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibonuclease H
Genome locationCG_Chr09:17255812..17256922
RNA-Seq ExpressionClCG09G013036
SyntenyClCG09G013036
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038839.1 Gag-pro-like protein [Cucumis melo var. makuwa]9.4e-9568.27Show/hide
Query:  VEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEPVSDEE
        VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE VS EE
Subjt:  VEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEPVSDEE

Query:  AREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNH
        A EFLKLIKQSEYKVI+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHD+S+N LSEIVENITA NC SFT+EEIP +G  HTKALHISVKCK+H
Subjt:  AREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNH

Query:  HVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARREFFVGTTMDPFSWGSPLLTTQKSKV
        HVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE F G T+D  S GSP+ TT K ++
Subjt:  HVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARREFFVGTTMDPFSWGSPLLTTQKSKV

KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]1.2e-8669.44Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC T  NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRT ARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]5.0e-8869.84Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENI A NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]2.1e-8669.05Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V  A   G+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRTPARIS+LSLF +SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]2.7e-6554Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL--------------------KNSPKEDEVRQPTLAGKKINHEPVS
        P    ++VPSPF + + +AVPWRY+CQ+I      N     G+TRSGRC  P NL                    K   K+ +V  P +A      + V+
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL--------------------KNSPKEDEVRQPTLAGKKINHEPVS

Query:  DEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKC
        DEEA EFLK++KQSEYK+I+Q+H TPARIS+LSLF++SEPH KVLLDILN+AHVGHDIS+   S I+ NIT+ N   FT++EIP +G  HTKALHI VKC
Subjt:  DEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKC

Query:  KNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        K++ +ARVLVDNGS+LNIM ++TL+KLP+D SH+  STMVV+AFDG+RRE
Subjt:  KNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

TrEMBL top hitse value%identityAlignment
A0A5A7TC31 Gag-pro-like protein4.5e-9568.27Show/hide
Query:  VEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEPVSDEE
        VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE VS EE
Subjt:  VEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEPVSDEE

Query:  AREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNH
        A EFLKLIKQSEYKVI+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHD+S+N LSEIVENITA NC SFT+EEIP +G  HTKALHISVKCK+H
Subjt:  AREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNH

Query:  HVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARREFFVGTTMDPFSWGSPLLTTQKSKV
        HVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE F G T+D  S GSP+ TT K ++
Subjt:  HVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARREFFVGTTMDPFSWGSPLLTTQKSKV

A0A5A7TUT4 Uncharacterized protein5.9e-8769.44Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC T  NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRT ARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

A0A5A7V681 Retrotrans_gag domain-containing protein2.4e-8869.84Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V SA  GG+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRTPARIS+LSLFM+SEPH KVLLDILN+AHVGHDIS+N LSEIVENI A NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

A0A5A7VAU5 Uncharacterized protein1.0e-8669.05Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP
        P    VE+P PFAY ++ AVPW+YECQ I + V  A   G+TRSGRC TP NLK+  KEDEVR                        + TL  K+ +HE 
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVR------------------------QPTLAGKKINHEP

Query:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV
        VS EEA EFLKLIKQSEYKVI+QLHRTPARIS+LSLF +SEPH KVLLDILN+AHVGHDIS+N LSEIVENITA NC SFT+EEIP +GT HTKALHISV
Subjt:  VSDEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISV

Query:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        KCK+HHVARVLVDNGSSLNIMSR+TLMKLPIDPS+L PSTMVVRAFDGARRE
Subjt:  KCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

A0A5D3DEB3 Retrotrans_gag domain-containing protein1.3e-6554Show/hide
Query:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL--------------------KNSPKEDEVRQPTLAGKKINHEPVS
        P    ++VPSPF + + +AVPWRY+CQ+I      N     G+TRSGRC  P NL                    K   K+ +V  P +A      + V+
Subjt:  PMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGV--NSAAAGGMTRSGRCCTPYNL--------------------KNSPKEDEVRQPTLAGKKINHEPVS

Query:  DEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKC
        DEEA EFLK++KQSEYK+I+Q+H TPARIS+LSLF++SEPH KVLLDILN+AHVGHDIS+   S I+ NIT+ N   FT++EIP +G  HTKALHI VKC
Subjt:  DEEAREFLKLIKQSEYKVIDQLHRTPARISILSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKC

Query:  KNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE
        K++ +ARVLVDNGS+LNIM ++TL+KLP+D SH+  STMVV+AFDG+RRE
Subjt:  KNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVVRAFDGARRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGACAACGATTGTTGAAGTACCAAGCCCTTTTGCTTATACGAATAGTCGGGCTGTACCATGGAGATATGAATGTCAATTGATTATGAATGGTGTTAATTCTGC
AGCAGCTGGAGGGATGACTCGTAGTGGGAGATGTTGTACTCCATATAACCTGAAGAATAGCCCAAAAGAAGATGAAGTCCGACAACCCACACTAGCTGGAAAGAAAATCA
ATCATGAACCTGTCTCCGATGAAGAAGCCCGTGAGTTCTTGAAGTTGATTAAGCAAAGTGAGTACAAAGTAATAGACCAGTTACATCGTACCCCGGCTCGTATATCGATT
TTGTCCTTATTCATGCACTCTGAACCACATTGCAAGGTTCTGCTTGATATCTTAAATCAAGCACATGTGGGTCATGACATTTCGATAAATGTACTTAGCGAAATTGTGGA
GAATATAACTGCTAAAAATTGCAATTCCTTTACAAATGAAGAGATCCCCTCGCAAGGTACTAGCCACACAAAGGCTTTGCACATATCAGTGAAGTGTAAGAACCATCATG
TGGCTAGGGTCCTTGTTGATAATGGATCATCCCTGAACATTATGTCAAGAACCACATTGATGAAACTCCCTATAGATCCATCCCACTTGAACCCAAGTACCATGGTTGTT
AGAGCCTTTGACGGTGCTCGTAGAGAGTTTTTTGTTGGGACGACCATGGATCCATTCAGCTGGGGCAGTCCCCTCCTCACTACACAAAAGAGTAAAGTTCAATATGGAAG
GTGGTCAAGTCATTGTTTGTCACACCCCCTCCCGGATTACCCACCTGTCCTGGAAGGGAATGTGAAGACAATAAACATCACCTCTCTTGTGACGCATATTGTTCCATCTT
ACATTCCTATCTCTGCATACATTCTGCTCATATACATACATAGAATTCAGTCATACAACACATGCTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATGACAACGATTGTTGAAGTACCAAGCCCTTTTGCTTATACGAATAGTCGGGCTGTACCATGGAGATATGAATGTCAATTGATTATGAATGGTGTTAATTCTGC
AGCAGCTGGAGGGATGACTCGTAGTGGGAGATGTTGTACTCCATATAACCTGAAGAATAGCCCAAAAGAAGATGAAGTCCGACAACCCACACTAGCTGGAAAGAAAATCA
ATCATGAACCTGTCTCCGATGAAGAAGCCCGTGAGTTCTTGAAGTTGATTAAGCAAAGTGAGTACAAAGTAATAGACCAGTTACATCGTACCCCGGCTCGTATATCGATT
TTGTCCTTATTCATGCACTCTGAACCACATTGCAAGGTTCTGCTTGATATCTTAAATCAAGCACATGTGGGTCATGACATTTCGATAAATGTACTTAGCGAAATTGTGGA
GAATATAACTGCTAAAAATTGCAATTCCTTTACAAATGAAGAGATCCCCTCGCAAGGTACTAGCCACACAAAGGCTTTGCACATATCAGTGAAGTGTAAGAACCATCATG
TGGCTAGGGTCCTTGTTGATAATGGATCATCCCTGAACATTATGTCAAGAACCACATTGATGAAACTCCCTATAGATCCATCCCACTTGAACCCAAGTACCATGGTTGTT
AGAGCCTTTGACGGTGCTCGTAGAGAGTTTTTTGTTGGGACGACCATGGATCCATTCAGCTGGGGCAGTCCCCTCCTCACTACACAAAAGAGTAAAGTTCAATATGGAAG
GTGGTCAAGTCATTGTTTGTCACACCCCCTCCCGGATTACCCACCTGTCCTGGAAGGGAATGTGAAGACAATAAACATCACCTCTCTTGTGACGCATATTGTTCCATCTT
ACATTCCTATCTCTGCATACATTCTGCTCATATACATACATAGAATTCAGTCATACAACACATGCTTATAA
Protein sequenceShow/hide protein sequence
MPMTTIVEVPSPFAYTNSRAVPWRYECQLIMNGVNSAAAGGMTRSGRCCTPYNLKNSPKEDEVRQPTLAGKKINHEPVSDEEAREFLKLIKQSEYKVIDQLHRTPARISI
LSLFMHSEPHCKVLLDILNQAHVGHDISINVLSEIVENITAKNCNSFTNEEIPSQGTSHTKALHISVKCKNHHVARVLVDNGSSLNIMSRTTLMKLPIDPSHLNPSTMVV
RAFDGARREFFVGTTMDPFSWGSPLLTTQKSKVQYGRWSSHCLSHPLPDYPPVLEGNVKTINITSLVTHIVPSYIPISAYILLIYIHRIQSYNTCL