; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG09G013575 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G013575
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationCG_Chr09:20502359..20502922
RNA-Seq ExpressionClCG09G013575
SyntenyClCG09G013575
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]3.4e-5274.01Show/hide
Query:  LVVFAAVIYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGGGGGGGWGWGGGGSGSGW
        LV F   +YGSRAEGL NG      TFLTFSELP+ N GE  RN+SGNTTTVEVSK+N  GGGGGYGWGW   GGGGGGGGGGGGGGG GWG GG G GW
Subjt:  LVVFAAVIYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW---GGGGGGGGGGGGGGGWGWGGGGSGSGW

Query:  WKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
        WKWGCGG+PKS R  R   R+KNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HCR
Subjt:  WKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-5171.27Show/hide
Query:  VVFAAVIYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--------GGGGGGGGGGGGGGGWGWGGGGS
        + F   +YGSRAEGL NG      TFLTFSELP+ N GE  RN+SGNTTTVEVSK+N  GGGGGYGWGW        GGGGGGGGGGGGGGG GWG GG 
Subjt:  VVFAAVIYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--------GGGGGGGGGGGGGGGWGWGGGGS

Query:  GSGWWKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
        G GWWKWGCGG+PKS R  R   R+KNV+RK++Y+E+DY MGEFA+CMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HCR
Subjt:  GSGWWKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]7.5e-6880.1Show/hide
Query:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRN-GGGGGGGYGWGW-----GGGGGGGGGGGG
        MGWEN IKL ALV+ A VIYGSR AEGLGNGS P NVTFLTFSELPQ N GE RRN+S NT+TVEVSK+N GGGGGGGYGWGW     GGGGGGGGGGGG
Subjt:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRN-GGGGGGGYGWGW-----GGGGGGGGGGGG

Query:  GGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRR--NERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC-RH
        GGG GWG GG G GWWKWGCGG+PK ++VGRR  N R+KNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HC RH
Subjt:  GGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRR--NERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC-RH

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]8.3e-6779.89Show/hide
Query:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--GGGGGGGGGGGGGGGW
        MGWEN IKL ALV+ A VI GSR AEGLGNGS P NVTFLTFSELPQ N GE RRN+S N+TTVEVSK+NGGGGGGGYGWGW  GGGGGGGGGGGGGGG 
Subjt:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--GGGGGGGGGGGGGGGW

Query:  GWGGGGSGSGWWKWGCGGKPKSDRVGRRNER--KKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC
        GWG GG G GWWKWGCGG+PKS+RVGRR++    +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HC
Subjt:  GWGGGGSGSGWWKWGCGGKPKSDRVGRRNER--KKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]2.7e-4974.4Show/hide
Query:  IYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGG-GYGWGWGGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKP
        +YGSRAEGL NG      TFLTFSELP  N GE  RN+SGNTTTVEVSK+N GGGGG G+GWG GGGGGGGGGGGGGGG GWG GG G GWWKWGCGG+P
Subjt:  IYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGG-GYGWGWGGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKP

Query:  KSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
        KS R  R   R+KNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHCGG CFYDCR+MCK+HCR
Subjt:  KSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein4.0e-6779.89Show/hide
Query:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--GGGGGGGGGGGGGGGW
        MGWEN IKL ALV+ A VI GSR AEGLGNGS P NVTFLTFSELPQ N GE RRN+S N+TTVEVSK+NGGGGGGGYGWGW  GGGGGGGGGGGGGGG 
Subjt:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGW--GGGGGGGGGGGGGGGW

Query:  GWGGGGSGSGWWKWGCGGKPKSDRVGRRNER--KKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC
        GWG GG G GWWKWGCGG+PKS+RVGRR++    +NV  K+MY EKDYRMGEFAQCMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HC
Subjt:  GWGGGGSGSGWWKWGCGGKPKSDRVGRRNER--KKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC

A0A1S3C029 keratin, type II cytoskeletal 13.7e-6880.1Show/hide
Query:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRN-GGGGGGGYGWGW-----GGGGGGGGGGGG
        MGWEN IKL ALV+ A VIYGSR AEGLGNGS P NVTFLTFSELPQ N GE RRN+S NT+TVEVSK+N GGGGGGGYGWGW     GGGGGGGGGGGG
Subjt:  MGWENQIKLCALVVFAAVIYGSR-AEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRN-GGGGGGGYGWGW-----GGGGGGGGGGGG

Query:  GGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRR--NERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC-RH
        GGG GWG GG G GWWKWGCGG+PK ++VGRR  N R+KNV RKKMY+EKDYRMGEFAQCMVKGRC+GMRLDCPLHCGG CFYDCRYMCK+HC RH
Subjt:  GGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRR--NERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHC-RH

A0A498HUM3 Uncharacterized protein1.6e-3145.92Show/hide
Query:  KLCALVVFAAVIYGSRAEG--LGNG------SKPTNVTFLTFSELPQENV-GEIRRNNSGNTTTVEVSKR------------------------------
        KL  ++       GS A G  L NG       +  N +FL  +E+P   + GE++   +  TT V+++ +                              
Subjt:  KLCALVVFAAVIYGSRAEG--LGNG------SKPTNVTFLTFSELPQENV-GEIRRNNSGNTTTVEVSKR------------------------------

Query:  -----NGGGGGGGYGWGWGGGGGGGGGG---------GGGGGWGWGGGGSGSGWWKWGCGGKPKSDR--VGRRNERKKNVNRKKMYDEKDYRMGEFAQCM
              GGGGGGGY WGWGGGGGGGGGG         GGGGGWGWGGGG G+GWWKWGCGG     R   GRRN       RK+ +DE++Y MGEFAQCM
Subjt:  -----NGGGGGGGYGWGWGGGGGGGGGG---------GGGGGWGWGGGGSGSGWWKWGCGGKPKSDR--VGRRNERKKNVNRKKMYDEKDYRMGEFAQCM

Query:  VKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
         KG+CKGMRLDCPLHCGG CFYDC++MCK+HCR
Subjt:  VKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR

A0A540M1B0 Uncharacterized protein2.9e-3347.81Show/hide
Query:  MGWENQIKLCALVVFAAVIYGSRAEG--LGNGSKPT--------NVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKR----------------------
        MG     KL  L+     I GS A G  L NG+  +          + L  +E+P   +GE+R   +  TT V+++ +                      
Subjt:  MGWENQIKLCALVVFAAVIYGSRAEG--LGNGSKPT--------NVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKR----------------------

Query:  NGGGGGGGYGWGWGGGGGGGGGGGG--------GGGWGWGGGGSGSGWWKWGCG---GKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRC
          GGGGGGY WGWGGGGGGGGGGGG        GGGWGWGGGG G+GWWKWGCG   GK +  R GRRN        K+ +DE++Y +GEFAQCM KGRC
Subjt:  NGGGGGGGYGWGWGGGGGGGGGGGG--------GGGWGWGGGGSGSGWWKWGCG---GKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRC

Query:  KGMRLDCPLHCGGSCFYDCRYMCKSHCR
        KGMRLDCPLHCGG CFYDC++MCK+HCR
Subjt:  KGMRLDCPLHCGGSCFYDCRYMCKSHCR

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like1.3e-4974.4Show/hide
Query:  IYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGG-GYGWGWGGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKP
        +YGSRAEGL NG      TFLTFSELP  N GE  RN+SGNTTTVEVSK+N GGGGG G+GWG GGGGGGGGGGGGGGG GWG GG G GWWKWGCGG+P
Subjt:  IYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGG-GYGWGWGGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKP

Query:  KSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
        KS R  R   R+KNV+RK++Y+E+DY +GEFA+CMVKGRC+GMRLDCPLHCGG CFYDCR+MCK+HCR
Subjt:  KSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein4.8e-2051.75Show/hide
Query:  NNSGNTTTVEV----SKRNGGGGGGGYGWGW--------GGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKD
        NN  N+TT  V     KR+  GG G Y WGW        GGGGGGGGGGGGGGGWGWGGGG G GW+KWGCGG  K      R E  K            
Subjt:  NNSGNTTTVEV----SKRNGGGGGGGYGWGW--------GGGGGGGGGGGGGGGWGWGGGGSGSGWWKWGCGGKPKSDRVGRRNERKKNVNRKKMYDEKD

Query:  YRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR
            E+A+C  +G+C G RL+CP HCGG CFYDC ++CK HCR
Subjt:  YRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGGAAAATCAAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTAAGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGAGAATGTAGGGGAGATTAGGAGAAACAATTCAGGTAATACTACTACGGTGGAGGTCAGCAAGCGGAATGGGGGAGGCGGCG
GGGGCGGCTATGGATGGGGATGGGGTGGAGGAGGAGGAGGCGGCGGAGGAGGTGGTGGTGGAGGAGGATGGGGATGGGGAGGAGGTGGAAGTGGGAGTGGGTGGTGGAAA
TGGGGTTGTGGAGGAAAACCAAAATCCGATAGAGTCGGACGACGCAACGAAAGGAAGAAAAATGTCAACAGGAAGAAAATGTATGATGAAAAAGATTATAGAATGGGAGA
ATTTGCCCAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCCCTCCATTGCGGCGGATCTTGTTTTTATGATTGTCGATATATGTGCAAATCTCATT
GTCGACACTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGGAAAATCAAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGATTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTAAGCCCACAAATGTCAC
TTTCTTGACATTCTCAGAGCTGCCACAGGAGAATGTAGGGGAGATTAGGAGAAACAATTCAGGTAATACTACTACGGTGGAGGTCAGCAAGCGGAATGGGGGAGGCGGCG
GGGGCGGCTATGGATGGGGATGGGGTGGAGGAGGAGGAGGCGGCGGAGGAGGTGGTGGTGGAGGAGGATGGGGATGGGGAGGAGGTGGAAGTGGGAGTGGGTGGTGGAAA
TGGGGTTGTGGAGGAAAACCAAAATCCGATAGAGTCGGACGACGCAACGAAAGGAAGAAAAATGTCAACAGGAAGAAAATGTATGATGAAAAAGATTATAGAATGGGAGA
ATTTGCCCAATGTATGGTGAAAGGAAGATGCAAAGGAATGAGATTAGACTGCCCCCTCCATTGCGGCGGATCTTGTTTTTATGATTGTCGATATATGTGCAAATCTCATT
GTCGACACTCCTAA
Protein sequenceShow/hide protein sequence
MGWENQIKLCALVVFAAVIYGSRAEGLGNGSKPTNVTFLTFSELPQENVGEIRRNNSGNTTTVEVSKRNGGGGGGGYGWGWGGGGGGGGGGGGGGGWGWGGGGSGSGWWK
WGCGGKPKSDRVGRRNERKKNVNRKKMYDEKDYRMGEFAQCMVKGRCKGMRLDCPLHCGGSCFYDCRYMCKSHCRHS