CuGenDBv2

Gene ID	ClCG09G013886
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag/pol protein
Genome location	CG_Chr09:21746348..21746671
RNA-Seq Expression	ClCG09G013886
Synteny	ClCG09G013886
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

7.0e-34

75.51

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0035986.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-33

72.45

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH + EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-33

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.1e-34

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0058279.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-33

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T187 Gag/pol protein

7.5e-34

72.45

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH + EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7T2V9 Gag/pol protein

3.4e-34

75.51

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7TZD0 Gag/pol protein

7.5e-34

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7UI63 Putative gag-pol polyprotein

4.4e-34

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7UYE8 Gag/pol protein

7.5e-34

74.49

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH + EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.0e-08

35.79

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVF
        +A+ +A +EA+WLK  LT + +   +   I +Y DN G I+ +     HK  +HI+ KYH   E VQ   + ++ I +E+ + D FTK L A  F
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-07

32.29

Show/hide

Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK
        +A  +  KE +WLK+FL +L +    ++   +YCD+  AI  SK S  H   +HI+ +YH + E+V    + V +I++  N  D  TK +    F+
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCT
GTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATGGGAGAAA
TTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVLEKGCDNVAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPMGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

ClCG09G013886 (gene) of Watermelon (Charleston Gray) v2.5 genome