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ClCG09G014230 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G014230
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGag-pol polyprotein
Genome locationCG_Chr09:25174151..25182793
RNA-Seq ExpressionClCG09G014230
SyntenyClCG09G014230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038133.1 envelope-like protein [Cucumis melo var. makuwa]2.4e-0735.4Show/hide
Query:  NVASVPLDDVSFHSKEGA----------------------------SLWKY-VLPAVALSVKYALLHRIGITNWCPSSHWS-DILLRSEPMGPAPNLFNI
        N++SVP+D +SFH +E                              S W    +PAVALSVKY +L++IGI NW PSSH S ++L  S+   P P   ++
Subjt:  NVASVPLDDVSFHSKEGA----------------------------SLWKY-VLPAVALSVKYALLHRIGITNWCPSSHWS-DILLRSEPMGPAPNLFNI

Query:  HPRLFKSHHAPDI
          +LF+    PDI
Subjt:  HPRLFKSHHAPDI

KAA0056163.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]1.8e-0728.49Show/hide
Query:  GKVAFVGNVASVPLDDVSFHSKEGASLWKYV---------------------------------------------------LPAVALSVKYALLHRIGI
        G+   + NV S+P+D VSFHSKEGA  WKYV                                                   LP  +L+VKYA+LHRIGI
Subjt:  GKVAFVGNVASVPLDDVSFHSKEGASLWKYV---------------------------------------------------LPAVALSVKYALLHRIGI

Query:  TNWCPSSHWSDILLR-------------------------------SEPMGPAPNLFNIHPRLFKSHHAPDI
        +NW PS+H S IL                                 ++ +G AP L  +  RLF+  H  D+
Subjt:  TNWCPSSHWSDILLR-------------------------------SEPMGPAPNLFNIHPRLFKSHHAPDI

KAA0066271.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.1e-1164.81Show/hide
Query:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI
        NV SVP+D VSFHS+EGA  W YVLP  +L+VKY++LHRI I+NW PS+H S I
Subjt:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI

KAA0067026.1 envelope-like protein [Cucumis melo var. makuwa]8.2e-0836.7Show/hide
Query:  NVASVPLDDVSFHSKE-----------------------GASLWKYV---LPAVALSVKYALLHRIGITNWCPSSHWSDILLRSEPMGPAPNLFNIHPRL
        NV+SVP+D +SFH +E                       G +L  +    +P V LS+KYA+LH+IGI NW PSSH S +   ++   P P    +  RL
Subjt:  NVASVPLDDVSFHSKE-----------------------GASLWKYV---LPAVALSVKYALLHRIGITNWCPSSHWSDILLRSEPMGPAPNLFNIHPRL

Query:  FKSHHAPDI
        F+  H PDI
Subjt:  FKSHHAPDI

TYJ97654.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.1e-1164.81Show/hide
Query:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI
        NV SVP+D VSFHS+EGA  W YVLP  +L+VKY++LHRI I+NW PS+H S I
Subjt:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI

TrEMBL top hitse value%identityAlignment
A0A5A7T560 Envelope-like protein1.2e-0735.4Show/hide
Query:  NVASVPLDDVSFHSKEGA----------------------------SLWKY-VLPAVALSVKYALLHRIGITNWCPSSHWS-DILLRSEPMGPAPNLFNI
        N++SVP+D +SFH +E                              S W    +PAVALSVKY +L++IGI NW PSSH S ++L  S+   P P   ++
Subjt:  NVASVPLDDVSFHSKEGA----------------------------SLWKY-VLPAVALSVKYALLHRIGITNWCPSSHWS-DILLRSEPMGPAPNLFNI

Query:  HPRLFKSHHAPDI
          +LF+    PDI
Subjt:  HPRLFKSHHAPDI

A0A5A7UJM1 Flocculation protein FLO11-like8.8e-0828.49Show/hide
Query:  GKVAFVGNVASVPLDDVSFHSKEGASLWKYV---------------------------------------------------LPAVALSVKYALLHRIGI
        G+   + NV S+P+D VSFHSKEGA  WKYV                                                   LP  +L+VKYA+LHRIGI
Subjt:  GKVAFVGNVASVPLDDVSFHSKEGASLWKYV---------------------------------------------------LPAVALSVKYALLHRIGI

Query:  TNWCPSSHWSDILLR-------------------------------SEPMGPAPNLFNIHPRLFKSHHAPDI
        +NW PS+H S IL                                 ++ +G AP L  +  RLF+  H  D+
Subjt:  TNWCPSSHWSDILLR-------------------------------SEPMGPAPNLFNIHPRLFKSHHAPDI

A0A5A7VKU4 Gag-pol polyprotein1.0e-1164.81Show/hide
Query:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI
        NV SVP+D VSFHS+EGA  W YVLP  +L+VKY++LHRI I+NW PS+H S I
Subjt:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI

A0A5D3BF02 Gag-pol polyprotein1.0e-1164.81Show/hide
Query:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI
        NV SVP+D VSFHS+EGA  W YVLP  +L+VKY++LHRI I+NW PS+H S I
Subjt:  NVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHWSDI

A0A5D3DS03 Envelope-like protein4.0e-0836.7Show/hide
Query:  NVASVPLDDVSFHSKE-----------------------GASLWKYV---LPAVALSVKYALLHRIGITNWCPSSHWSDILLRSEPMGPAPNLFNIHPRL
        NV+SVP+D +SFH +E                       G +L  +    +P V LS+KYA+LH+IGI NW PSSH S +   ++   P P    +  RL
Subjt:  NVASVPLDDVSFHSKE-----------------------GASLWKYV---LPAVALSVKYALLHRIGITNWCPSSHWSDILLRSEPMGPAPNLFNIHPRL

Query:  FKSHHAPDI
        F+  H PDI
Subjt:  FKSHHAPDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTAGGGTCTTCTAGTGTCGAGTTTGAAAAGTCTGAGAAAATGTCTCTTGACGAAGATCATTGGGGTCTATTAAGTAGTTTTGACGAAGAAGCTCCTGTA
AATGCAAGAGTAACTAGGAGTTCGATAAAAATAAAAGGGAAGGTTGCTTTCGTGGGGAATGTTGCTTCAGTTCCTTTAGATGATGTGTCCTTTCATTCTAAAGAA
GGGGCAAGTCTCTGGAAGTATGTGTTACCTGCTGTAGCTCTCAGTGTTAAATATGCTCTTCTCCATCGCATTGGGATAACTAACTGGTGTCCTTCCTCTCATTGG
TCGGATATATTGTTGCGCTCTGAGCCCATGGGACCTGCCCCTAACTTATTTAATATTCATCCCCGCCTCTTTAAGAGTCATCATGCGCCTGATATCAAGATTTCT
TCCTCTATGTTGCACTTAGATGTTCCCGGTCGCGCGGTGAATAGGTTCAAATGGATAGTAAATGTCACAAGAGGATTTGCATTTGCTTTCTTCACGTTCCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTAGGGTCTTCTAGTGTCGAGTTTGAAAAGTCTGAGAAAATGTCTCTTGACGAAGATCATTGGGGTCTATTAAGTAGTTTTGACGAAGAAGCTCCTGTA
AATGCAAGAGTAACTAGGAGTTCGATAAAAATAAAAGGGAAGGTTGCTTTCGTGGGGAATGTTGCTTCAGTTCCTTTAGATGATGTGTCCTTTCATTCTAAAGAA
GGGGCAAGTCTCTGGAAGTATGTGTTACCTGCTGTAGCTCTCAGTGTTAAATATGCTCTTCTCCATCGCATTGGGATAACTAACTGGTGTCCTTCCTCTCATTGG
TCGGATATATTGTTGCGCTCTGAGCCCATGGGACCTGCCCCTAACTTATTTAATATTCATCCCCGCCTCTTTAAGAGTCATCATGCGCCTGATATCAAGATTTCT
TCCTCTATGTTGCACTTAGATGTTCCCGGTCGCGCGGTGAATAGGTTCAAATGGATAGTAAATGTCACAAGAGGATTTGCATTTGCTTTCTTCACGTTCCACTAG
Protein sequenceShow/hide protein sequence
MSLGSSSVEFEKSEKMSLDEDHWGLLSSFDEEAPVNARVTRSSIKIKGKVAFVGNVASVPLDDVSFHSKEGASLWKYVLPAVALSVKYALLHRIGITNWCPSSHW
SDILLRSEPMGPAPNLFNIHPRLFKSHHAPDIKISSSMLHLDVPGRAVNRFKWIVNVTRGFAFAFFTFH