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ClCG09G014540 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G014540
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr09:26524859..26525961
RNA-Seq ExpressionClCG09G014540
SyntenyClCG09G014540
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051398.1 Integrase, catalytic core [Cucumis melo var. makuwa]5.7e-1944.85Show/hide
Query:  KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERII
        K   + S L+ K E L  +Y  LPLGGY K A FW P++DK  KKL    WK  NL +GGRLTLC +V      +  P T   +    P KV    E  +
Subjt:  KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERII

Query:  KAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL
        + F  +G  GSK+NHL K DL+SKSQ DGG+G   L
Subjt:  KAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL

RVW55296.1 putative ribonuclease H protein [Vitis vinifera]1.5e-1631.3Show/hide
Query:  LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKG
        L  KA     +YL LPLGG  K + FW P+I++I ++LD W  K +  F GGR+TL ++  + H+        +    PA V   IER+ + F W G+  
Subjt:  LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKG

Query:  SKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA------SLRRMLEDEEQILL
         K +HL  +D++ K +S GG+GFG ++   ++L                 +++L   GS S  W+ +          W A      S   +LED E ++ 
Subjt:  SKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA------SLRRMLEDEEQILL

Query:  SSLLDKRVASQPDCRSWSLDPSGKLMLAPF
        S        S PD RSWS+ PSG   +  F
Subjt:  SSLLDKRVASQPDCRSWSLDPSGKLMLAPF

TYJ97221.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa]1.1e-2735.06Show/hide
Query:  STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKA
        +  R+  KAE L  +YL LPLGGY +   FW P+ID+IHKKLDR  WK FN+ +GGR  LC AV    Q  +L+ K         +P      +E+I + 
Subjt:  STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKA

Query:  FFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL---NSNFLS---------------------------------------------------------
        FFW+G  GSK+NHL K++L+S S    G+G GAL   NS  L+                                                         
Subjt:  FFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL---NSNFLS---------------------------------------------------------

Query:  ---LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE----QILLSSLLDKRVASQPDCRSWSLDPSGKL
           L RI LLP G V+ HWD  T SW+   RR L+D E    +  LS LL ++V    D + WS+DP G L
Subjt:  ---LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE----QILLSSLLDKRVASQPDCRSWSLDPSGKL

TYK31262.1 DENN domain and WD repeat-containing protein SCD1-like [Cucumis melo var. makuwa]6.3e-1840.65Show/hide
Query:  KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGV
        ++ +FW  +IDKI KK D+  W+ FNL +GGR TLC  V    LA       +    P KV+  IERII+ F W+G  GS+INHL   D+          
Subjt:  KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGV

Query:  GFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD
           AL+     LFRI LLPNG V+ HWD    SW+    R+LED+E +    +L+
Subjt:  GFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD

XP_038880332.1 uncharacterized protein LOC120071973 [Benincasa hispida]1.8e-2543.92Show/hide
Query:  MEKDKLST--SRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQ----VLHLAMKKPGTQNKLHNPAKVIK
        +E++K+ +  ++L+ K ++L  MYL LPLGGY K  SFW P+IDK+  KLD+  W+ FNL +GG+ TLCK+V       +L++           P KV+ 
Subjt:  MEKDKLST--SRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQ----VLHLAMKKPGTQNKLHNPAKVIK

Query:  VIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLS
        ++ER +K FFW+G KG KINHL K++L++K+Q DGG+G G L +  L+
Subjt:  VIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLS

TrEMBL top hitse value%identityAlignment
A0A438F5X5 Putative ribonuclease H protein7.5e-1731.3Show/hide
Query:  LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKG
        L  KA     +YL LPLGG  K + FW P+I++I ++LD W  K +  F GGR+TL ++  + H+        +    PA V   IER+ + F W G+  
Subjt:  LHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKG

Query:  SKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA------SLRRMLEDEEQILL
         K +HL  +D++ K +S GG+GFG ++   ++L                 +++L   GS S  W+ +          W A      S   +LED E ++ 
Subjt:  SKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADTQ-------SWTA------SLRRMLEDEEQILL

Query:  SSLLDKRVASQPDCRSWSLDPSGKLMLAPF
        S        S PD RSWS+ PSG   +  F
Subjt:  SSLLDKRVASQPDCRSWSLDPSGKLMLAPF

A0A438JNC2 Putative ribonuclease H protein3.7e-1630.08Show/hide
Query:  MEKDKLS--TSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIER
        +E++ LS     L  KA     +YL LPLGG  K + FW P+I++I ++LD W  K +  F GGR+TL ++  + H+        +    PA V   IER
Subjt:  MEKDKLS--TSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIER

Query:  IIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADT-----------------QSW
        + + F W G+   K +HL  +D++ K +S GG+GFG ++   ++L                 +++L   GS S  WD +                  Q +
Subjt:  IIKAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGALNSNFLSLF----------------RILLLPNGSVSYHWDADT-----------------QSW

Query:  TASLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPF
        +   R ++ED E ++ S       +S PD RSWSL P G   +  F
Subjt:  TASLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPF

A0A5A7U808 Integrase, catalytic core2.7e-1944.85Show/hide
Query:  KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERII
        K   + S L+ K E L  +Y  LPLGGY K A FW P++DK  KKL    WK  NL +GGRLTLC +V      +  P T   +    P KV    E  +
Subjt:  KDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGT--QNKLHNPAKVIKVIERII

Query:  KAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL
        + F  +G  GSK+NHL K DL+SKSQ DGG+G   L
Subjt:  KAFFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL

A0A5D3BF26 Putative LRR receptor-like serine/threonine-protein kinase5.5e-2835.06Show/hide
Query:  STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKA
        +  R+  KAE L  +YL LPLGGY +   FW P+ID+IHKKLDR  WK FN+ +GGR  LC AV    Q  +L+ K         +P      +E+I + 
Subjt:  STSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAV----QVLHLAMKKPGTQNKLHNPAKVIKVIERIIKA

Query:  FFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL---NSNFLS---------------------------------------------------------
        FFW+G  GSK+NHL K++L+S S    G+G GAL   NS  L+                                                         
Subjt:  FFWKGLKGSKINHLAKYDLISKSQSDGGVGFGAL---NSNFLS---------------------------------------------------------

Query:  ---LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE----QILLSSLLDKRVASQPDCRSWSLDPSGKL
           L RI LLP G V+ HWD  T SW+   RR L+D E    +  LS LL ++V    D + WS+DP G L
Subjt:  ---LFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEE----QILLSSLLDKRVASQPDCRSWSLDPSGKL

A0A5D3E5T3 DENN domain and WD repeat-containing protein SCD1-like3.0e-1840.65Show/hide
Query:  KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGV
        ++ +FW  +IDKI KK D+  W+ FNL +GGR TLC  V    LA       +    P KV+  IERII+ F W+G  GS+INHL   D+          
Subjt:  KKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKGSKINHLAKYDLISKSQSDGGV

Query:  GFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD
           AL+     LFRI LLPNG V+ HWD    SW+    R+LED+E +    +L+
Subjt:  GFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAGATAAGTTGTCCACTTCTCGCTTGCATTGGAAGGCAGAATATTTGTCCTTTATGTATCTTAGACTTCCACTTGGTGGTTATCTAAAGAAAGCTTCATTTTG
GATGCCGATAATTGATAAGATCCATAAGAAATTGGATAGGTGGAATTGGAAATGCTTTAATCTTTTCCAAGGTGGAAGACTAACTTTGTGCAAAGCAGTGCAGGTCTTGC
ACCTCGCCATGAAAAAGCCAGGCACACAAAATAAGCTGCACAATCCAGCTAAGGTGATTAAGGTTATAGAAAGAATTATTAAAGCTTTCTTTTGGAAAGGTCTTAAAGGG
AGTAAGATAAATCATCTGGCTAAATACGATTTGATTTCCAAATCTCAATCAGATGGGGGTGTCGGCTTTGGGGCTTTGAATTCAAATTTTCTTAGTTTATTCAGAATCTT
GTTATTGCCCAATGGTTCAGTTTCTTATCATTGGGATGCAGATACTCAATCATGGACAGCCTCTTTAAGACGAATGTTGGAAGATGAAGAACAGATTTTATTGAGTTCTT
TATTGGATAAAAGAGTGGCTTCGCAGCCAGATTGTCGAAGTTGGAGCTTGGACCCTTCTGGAAAATTAATGTTAGCTCCCTTTCCAAGCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAGATAAGTTGTCCACTTCTCGCTTGCATTGGAAGGCAGAATATTTGTCCTTTATGTATCTTAGACTTCCACTTGGTGGTTATCTAAAGAAAGCTTCATTTTG
GATGCCGATAATTGATAAGATCCATAAGAAATTGGATAGGTGGAATTGGAAATGCTTTAATCTTTTCCAAGGTGGAAGACTAACTTTGTGCAAAGCAGTGCAGGTCTTGC
ACCTCGCCATGAAAAAGCCAGGCACACAAAATAAGCTGCACAATCCAGCTAAGGTGATTAAGGTTATAGAAAGAATTATTAAAGCTTTCTTTTGGAAAGGTCTTAAAGGG
AGTAAGATAAATCATCTGGCTAAATACGATTTGATTTCCAAATCTCAATCAGATGGGGGTGTCGGCTTTGGGGCTTTGAATTCAAATTTTCTTAGTTTATTCAGAATCTT
GTTATTGCCCAATGGTTCAGTTTCTTATCATTGGGATGCAGATACTCAATCATGGACAGCCTCTTTAAGACGAATGTTGGAAGATGAAGAACAGATTTTATTGAGTTCTT
TATTGGATAAAAGAGTGGCTTCGCAGCCAGATTGTCGAAGTTGGAGCTTGGACCCTTCTGGAAAATTAATGTTAGCTCCCTTTCCAAGCATTTAG
Protein sequenceShow/hide protein sequence
MEKDKLSTSRLHWKAEYLSFMYLRLPLGGYLKKASFWMPIIDKIHKKLDRWNWKCFNLFQGGRLTLCKAVQVLHLAMKKPGTQNKLHNPAKVIKVIERIIKAFFWKGLKG
SKINHLAKYDLISKSQSDGGVGFGALNSNFLSLFRILLLPNGSVSYHWDADTQSWTASLRRMLEDEEQILLSSLLDKRVASQPDCRSWSLDPSGKLMLAPFPSI