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ClCG09G014662 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G014662
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptiongeneral transcription factor 3C polypeptide 5-like isoform X2
Genome locationCG_Chr09:26930486..26933003
RNA-Seq ExpressionClCG09G014662
SyntenyClCG09G014662
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142476.1 general transcription factor 3C polypeptide 5 isoform X2 [Cucumis sativus]2.0e-1192.68Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTPA+YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

XP_008465056.1 PREDICTED: general transcription factor 3C polypeptide 5-like isoform X1 [Cucumis melo]5.9e-1190.24Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP +YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

XP_008465058.1 PREDICTED: general transcription factor 3C polypeptide 5-like isoform X2 [Cucumis melo]5.9e-1190.24Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP +YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

XP_011655959.1 general transcription factor 3C polypeptide 5 isoform X1 [Cucumis sativus]2.0e-1192.68Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTPA+YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

XP_038888320.1 general transcription factor 3C polypeptide 5-like [Benincasa hispida]3.1e-1278.18Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDILVFLCCYILLLFFL
        LKTP +Y+PRKKSET+HNP + I EVDIEPVLAIDFNIKDIL  L C ILLLFFL
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDILVFLCCYILLLFFL

TrEMBL top hitse value%identityAlignment
A0A0A0KV91 Uncharacterized protein1.7e-1178.57Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDILVFLCCYILLLFFLS
        LKTPA+YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDILV L   + LL  L+
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDILVFLCCYILLLFFLS

A0A1S3CMW8 general transcription factor 3C polypeptide 5-like isoform X22.8e-1190.24Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP +YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

A0A1S4E516 general transcription factor 3C polypeptide 5-like isoform X12.8e-1190.24Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP +YIPRKKSETV NPCEVI EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

A0A6J1EPX9 general transcription factor 3C polypeptide 5-like1.6e-0673.17Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP+++ PRKK ET H PC    EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

A0A6J1JKL2 general transcription factor 3C polypeptide 5-like1.6e-0673.17Show/hide
Query:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI
        LKTP+++ PRKK ET H PC    EVDIEPVLAIDFNIKDI
Subjt:  LKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGGAGGGCGAGGAGGATGGAAGTACTGGATTTTGCTGATGAGGTGGAGCTATGGTGGTTGGGGAAGGGGTGAATTGCATGAAGAGATGGGAAAACAAGTTAAGGG
CCACGTAAAGTGTCAGTTAAAAACACCTGCTCTATATATTCCAAGAAAGAAATCAGAAACTGTACATAATCCTTGCGAAGTAATTCGCGAGGTGGATATAGAACCTGTTC
TTGCAATCGATTTCAACATTAAAGATATCCTTGTTTTCTTATGTTGCTATATTTTATTGTTATTTTTTCTTTCTGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGGAGGGCGAGGAGGATGGAAGTACTGGATTTTGCTGATGAGGTGGAGCTATGGTGGTTGGGGAAGGGGTGAATTGCATGAAGAGATGGGAAAACAAGTTAAGGG
CCACGTAAAGTGTCAGTTAAAAACACCTGCTCTATATATTCCAAGAAAGAAATCAGAAACTGTACATAATCCTTGCGAAGTAATTCGCGAGGTGGATATAGAACCTGTTC
TTGCAATCGATTTCAACATTAAAGATATCCTTGTTTTCTTATGTTGCTATATTTTATTGTTATTTTTTCTTTCTGGCTAG
Protein sequenceShow/hide protein sequence
MTGGRGGWKYWILLMRWSYGGWGRGELHEEMGKQVKGHVKCQLKTPALYIPRKKSETVHNPCEVIREVDIEPVLAIDFNIKDILVFLCCYILLLFFLSG