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ClCG09G014770 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G014770
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr09:27553580..27554425
RNA-Seq ExpressionClCG09G014770
SyntenyClCG09G014770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]4.8e-0740Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEV
        CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD++KAYDS  +  F+ G +   G    FVS     V S +  
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEV

Query:  VELASSSMGF
        + +  S  GF
Subjt:  VELASSSMGF

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]4.8e-0744.32Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS
        CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD++KAYDS  +  F+ G +   G    FVS
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.7e-0750Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS
        CI+KIL++RL+     F+  NQS ++P  SI+DN       V+ YHLN G  RC LKVD++KAYDS
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]7.4e-0845.56Show/hide
Query:  CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVV
        CI++IL++RL      FVSGNQS ++P  SI+DN       V  YHL+RG  RC +KVD++KAYDS  +  F+ G +   G +  FVS V
Subjt:  CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVV

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]3.7e-0744.44Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVV
        CI++IL++RL+     FVSGNQ  ++P  SI+DN       V  YHL RG  RC +KVD+ KAYDS  +  F+ G +   G    FVS V
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVV

TrEMBL top hitse value%identityAlignment
A0A5A7TZS0 Reverse transcriptase domain-containing protein2.3e-0740Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEV
        CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD++KAYDS  +  F+ G +   G    FVS     V S +  
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS-----VVSQVEV

Query:  VELASSSMGF
        + +  S  GF
Subjt:  VELASSSMGF

A0A5A7V3Z0 Reverse transcriptase domain-containing protein2.3e-0744.32Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS
        CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD++KAYDS  +  F+ G +   G    FVS
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVS

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.0e-0741.18Show/hide
Query:  CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS-------------RESLGFI-MGFMGNGGKSSMF
        CI+KIL++R+      F+S NQS ++P  SI+DN       V  YHLN G  R  LKVD++KAYDS                L F+  G   N  KSS+F
Subjt:  CINKILSNRL-----QFVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS-------------RESLGFI-MGFMGNGGKSSMF

Query:  VSVVSQVEVVELASSSMGF
        V+ VS      LA +SMGF
Subjt:  VSVVSQVEVVELASSSMGF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.8e-0750Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS
        CI+KIL++RL+     F+  NQS ++P  SI+DN       V+ YHLN G  RC LKVD++KAYDS
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS

A0A5D3DT20 Reverse transcriptase domain-containing protein3.9e-0750Show/hide
Query:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS
        CI+KIL++RL+     F+S NQS ++P  SI++N       V  YHLN G  RC LKVD++KAYDS
Subjt:  CINKILSNRLQ-----FVSGNQSVYVPSGSIVDN-------VDCYHLNRGVSRCVLKVDIRKAYDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGTTGTATTAATAAGATTTTGTCTAATAGGTTGCAGTTTGTTAGCGGGAATCAATCTGTTTATGTGCCTAGTGGGAGCATAGTGGATAATGTGGATTGT
TATCATCTTAATAGGGGTGTCTCACGTTGTGTCCTAAAGGTTGACATTCGAAAGGCCTATGACTCTAGGGAGTCCTTAGGGTTTATCATGGGATTTATGGGAAAT
GGGGGTAAGAGCTCAATGTTTGTTTCTGTTGTTAGCCAGGTGGAGGTTGTGGAGTTGGCTAGTAGTAGTATGGGGTTCTCTTGGATTCTCTCGCACTTCGTTATC
CAACTGGTTAAAGTATGTGGATTGCAAGCCTTTGATTGGGAGGATTACTATGCATGTAAATACCTCAGTCTGCTTGAACTCTTTCTTATATATGATGTTGGACTG
GATTCGTGTGCTTATTTGGGGAGAGGTTCTAATGGTGGTAGGGATCGTGCG
mRNA sequenceShow/hide mRNA sequence
TGTGAACGCTACTGTGATTCTTAAATCTCTAAGAGGCTGGATTCAGAAAATCTTGAGGATTTTCGTCCAATTTCTTGTTGTAATGAGTTGTTGTATTAATAAGAT
TTTGTCTAATAGGTTGCAGTTTGTTAGCGGGAATCAATCTGTTTATGTGCCTAGTGGGAGCATAGTGGATAATGTGGATTGTTATCATCTTAATAGGGGTGTCTC
ACGTTGTGTCCTAAAGGTTGACATTCGAAAGGCCTATGACTCTAGGGAGTCCTTAGGGTTTATCATGGGATTTATGGGAAATGGGGGTAAGAGCTCAATGTTTGT
TTCTGTTGTTAGCCAGGTGGAGGTTGTGGAGTTGGCTAGTAGTAGTATGGGGTTCTCTTGGATTCTCTCGCACTTCGTTATCCAACTGGTTAAAGTATGTGGATT
GCAAGCCTTTGATTGGGAGGATTACTATGCATGTAAATACCTCAGTCTGCTTGAACTCTTTCTTATATATGATGTTGGACTGGATTCGTGTGCTTATTTGGGGAG
AGGTTCTAATGGTGGTAGGGATCGTGCG
Protein sequenceShow/hide protein sequence
MSCCINKILSNRLQFVSGNQSVYVPSGSIVDNVDCYHLNRGVSRCVLKVDIRKAYDSRESLGFIMGFMGNGGKSSMFVSVVSQVEVVELASSSMGFSWILSHFVI
QLVKVCGLQAFDWEDYYACKYLSLLELFLIYDVGLDSCAYLGRGSNGGRDRA