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ClCG09G014900 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G014900
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCG_Chr09:27830333..27830926
RNA-Seq ExpressionClCG09G014900
SyntenyClCG09G014900
Gene Ontology termsNA
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051137.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.4e-2643.39Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KTT N VE  L   D +L ALKE+L L                   VG+EV+LKLR YRQRSLA+K                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +A+IH+VFH+SQLK  +G    VQ QHP LT++FE Q  PE +LGIR N E    EWL+   +LP+SEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

KAA0057186.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.1e-2643.92Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  + VE  L   D ++ ALKE+L +                   VGDEV+LKLR YRQRSLAKK                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIH+VFH+SQLK  +GK HT+Q Q P LT +FE Q  PET+LGIR + E    EWLV    LP+SEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]3.3e-2644.97Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG  KT  + VE  L   D +L ALKE+L L                   VGDEV+LKLR Y QRSLA+K                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTV-QQHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIHDVFH+SQLK  +GK H V QQ P LT DFE Q  PE +LGIR N +    EWLV   NLP++EATWE    M QQFPT HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTV-QQHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]7.9e-2844.97Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG +KT  N VE  L   D +L+ALKE+L +                   VGDEV+LKLR YRQ SLA+K                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIHDVFH+SQLK  +GK H VQ Q P LT++FE Q QPET+LGIR N +    EWLV    LP++EATWE    M QQFPT HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

TYK23222.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.1e-2643.92Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  + VE  L   D ++ ALKE+L +                   VGDEV+LKLR Y QRSLAKK                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIH+VFH+SQLK  +GK HT+Q Q P LT +FE Q  PET+LGIR + E    EWLV    LPDSEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

TrEMBL top hitse value%identityAlignment
A0A5A7U9P7 Retrotransposable element Tf22.1e-2643.39Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KTT N VE  L   D +L ALKE+L L                   VG+EV+LKLR YRQRSLA+K                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +A+IH+VFH+SQLK  +G    VQ QHP LT++FE Q  PE +LGIR N E    EWL+   +LP+SEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

A0A5A7USP1 Transposon Ty3-G Gag-Pol polyprotein5.6e-2743.92Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  + VE  L   D ++ ALKE+L +                   VGDEV+LKLR YRQRSLAKK                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIH+VFH+SQLK  +GK HT+Q Q P LT +FE Q  PET+LGIR + E    EWLV    LP+SEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

A0A5D3CTA0 Retrotransposable element Tf22.8e-2642.86Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  N VE  L   D ++ ALKE+L L                   VG+EV+LKLR YRQRSLA+K                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +A+IH+VFH+SQLK  +G    VQ QHP LT+DFE Q  PET+LGIR N E    EWL+    LP+SEATWE    M QQ P+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

A0A5D3DI23 Transposon Ty3-G Gag-Pol polyprotein5.6e-2743.92Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  + VE  L   D ++ ALKE+L +                   VGDEV+LKLR Y QRSLAKK                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIH+VFH+SQLK  +GK HT+Q Q P LT +FE Q  PET+LGIR + E    EWLV    LPDSEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

A0A5D3DYX4 Transposon Ty3-G Gag-Pol polyprotein3.6e-2643.39Show/hide
Query:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------
        +SYG+ KT  + VE  L   D ++ ALKE+L +                   VGDEV+LKLR YRQ SLAKK                            
Subjt:  MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLRTYRQRSLAKK----------------------------

Query:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE
          +ASIH+ FH+SQLK  +GK HT+Q Q P LT +FE Q  PET+LGIR + E    EWLV    LPDSEATWE    M QQFP+ HLE
Subjt:  --DASIHDVFHVSQLKKMIGKNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMRQQFPTLHLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATGGTGAGAACAAGACCACTGGCAATGCAGTAGAACAACAATTGATGGCTCATGATGCATCGTTAGTGGCTCTTAAGGAGCATTTGATGTTGGTTGGGGATGA
GGTTTTTCTAAAACTCAGAACATATAGGCAGCGGTCATTGGCTAAGAAAGATGCTTCGATCCATGATGTTTTCCATGTCTCTCAGCTCAAAAAGATGATAGGAAAGAACC
ACACGGTGCAACAGCATCCTCACCTTACTAAGGATTTCGAATGGCAAGCCCAACCAGAAACAATTTTGGGAATTAGGTCGAATGGTGAGACAACAATGATTGAATGGCTT
GTGAACTTACCCGATAGTGAAGCTACATGGGAACCCAGTGATTTCATGCGCCAGCAATTTCCTACCCTCCACCTTGAGAGATTTATCGATTTTCTGAAAAATAAGCAATT
GACTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTATGGTGAGAACAAGACCACTGGCAATGCAGTAGAACAACAATTGATGGCTCATGATGCATCGTTAGTGGCTCTTAAGGAGCATTTGATGTTGGTTGGGGATGA
GGTTTTTCTAAAACTCAGAACATATAGGCAGCGGTCATTGGCTAAGAAAGATGCTTCGATCCATGATGTTTTCCATGTCTCTCAGCTCAAAAAGATGATAGGAAAGAACC
ACACGGTGCAACAGCATCCTCACCTTACTAAGGATTTCGAATGGCAAGCCCAACCAGAAACAATTTTGGGAATTAGGTCGAATGGTGAGACAACAATGATTGAATGGCTT
GTGAACTTACCCGATAGTGAAGCTACATGGGAACCCAGTGATTTCATGCGCCAGCAATTTCCTACCCTCCACCTTGAGAGATTTATCGATTTTCTGAAAAATAAGCAATT
GACTAAATGA
Protein sequenceShow/hide protein sequence
MSYGENKTTGNAVEQQLMAHDASLVALKEHLMLVGDEVFLKLRTYRQRSLAKKDASIHDVFHVSQLKKMIGKNHTVQQHPHLTKDFEWQAQPETILGIRSNGETTMIEWL
VNLPDSEATWEPSDFMRQQFPTLHLERFIDFLKNKQLTK